miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27594 5' -61.7 NC_005882.1 + 14128 0.7 0.185556
Target:  5'- aGGCC--GCGAagaacauCGCGACGCuGGcCCGCGc -3'
miRNA:   3'- -CCGGaaCGCU-------GCGCUGCG-CC-GGCGCc -5'
27594 5' -61.7 NC_005882.1 + 14193 0.69 0.205895
Target:  5'- gGGCCa-GCGuCGCGAuguucuuCGCGGCCuuGGa -3'
miRNA:   3'- -CCGGaaCGCuGCGCU-------GCGCCGGcgCC- -5'
27594 5' -61.7 NC_005882.1 + 14249 0.68 0.259402
Target:  5'- cGGCCUgucCGA--UGACGCGGCCGaCGc -3'
miRNA:   3'- -CCGGAac-GCUgcGCUGCGCCGGC-GCc -5'
27594 5' -61.7 NC_005882.1 + 14290 0.66 0.31536
Target:  5'- aGGCCgcUGCucuuGACGaccuuGuCGaCGGCCGCGGc -3'
miRNA:   3'- -CCGGa-ACG----CUGCg----CuGC-GCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 14748 0.68 0.261997
Target:  5'- cGGCCUugcuUGCcgcgcagguuggacgGGCGCGACGacaGuGCCGUGa -3'
miRNA:   3'- -CCGGA----ACG---------------CUGCGCUGCg--C-CGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 14941 0.67 0.293366
Target:  5'- cGGCgaacGUGAUGCGAUGCaGGCUGUaGGg -3'
miRNA:   3'- -CCGgaa-CGCUGCGCUGCG-CCGGCG-CC- -5'
27594 5' -61.7 NC_005882.1 + 15417 0.66 0.338576
Target:  5'- cGCCUU-CGACGCG-CGgGGCaaCGGc -3'
miRNA:   3'- cCGGAAcGCUGCGCuGCgCCGgcGCC- -5'
27594 5' -61.7 NC_005882.1 + 15865 0.69 0.206427
Target:  5'- cGCUUUcgucGCaGAuCGCGACGCGGgCGCGa -3'
miRNA:   3'- cCGGAA----CG-CU-GCGCUGCGCCgGCGCc -5'
27594 5' -61.7 NC_005882.1 + 16069 0.69 0.201157
Target:  5'- cGCCUUGCGGCgGCGcACGCacccGCCGaCGu -3'
miRNA:   3'- cCGGAACGCUG-CGC-UGCGc---CGGC-GCc -5'
27594 5' -61.7 NC_005882.1 + 16694 0.66 0.338576
Target:  5'- -aCCgagGCGACGuCGACGCGcgcguCCGCGc -3'
miRNA:   3'- ccGGaa-CGCUGC-GCUGCGCc----GGCGCc -5'
27594 5' -61.7 NC_005882.1 + 17819 0.66 0.307893
Target:  5'- uGCCggugccGCGugGUGGCGCuGUCGCa- -3'
miRNA:   3'- cCGGaa----CGCugCGCUGCGcCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 18402 1.11 0.000121
Target:  5'- cGGCCUUGCGACGCGACGCGGCCGCGGu -3'
miRNA:   3'- -CCGGAACGCUGCGCUGCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 19550 0.66 0.330702
Target:  5'- cGCCgacGCGcagGCGCGugaGCGCaaGGCgGCGGa -3'
miRNA:   3'- cCGGaa-CGC---UGCGC---UGCG--CCGgCGCC- -5'
27594 5' -61.7 NC_005882.1 + 19616 0.67 0.272587
Target:  5'- cGCCUUGCGcucACGCGccuGCGCGuCgGCGa -3'
miRNA:   3'- cCGGAACGC---UGCGC---UGCGCcGgCGCc -5'
27594 5' -61.7 NC_005882.1 + 21475 0.68 0.234005
Target:  5'- cGCCagGCggaggaaaucgucGACGCGcacuuGCGCGGCCGCu- -3'
miRNA:   3'- cCGGaaCG-------------CUGCGC-----UGCGCCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 21582 0.68 0.246742
Target:  5'- cGUCggaaccgGCGACaGCGGCagguuguaGCGGCCGCGc -3'
miRNA:   3'- cCGGaa-----CGCUG-CGCUG--------CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 21676 0.66 0.318385
Target:  5'- aGGUC-UGCGacacgguguccgggaGCGCGGCGCcuuccGGUCGaCGGg -3'
miRNA:   3'- -CCGGaACGC---------------UGCGCUGCG-----CCGGC-GCC- -5'
27594 5' -61.7 NC_005882.1 + 21994 0.68 0.259402
Target:  5'- uGCCgucGCGAuCGUGcuGCGCcagcucaacGGCCGCGGc -3'
miRNA:   3'- cCGGaa-CGCU-GCGC--UGCG---------CCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 22736 0.67 0.286305
Target:  5'- aGCgCUUGCGGgauCGUGAagccgGCGaGCUGCGGg -3'
miRNA:   3'- cCG-GAACGCU---GCGCUg----CGC-CGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 22812 0.69 0.201157
Target:  5'- gGGCCgUGCaaaacuCGCGcAUcCGGCCGCGGc -3'
miRNA:   3'- -CCGGaACGcu----GCGC-UGcGCCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.