miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27594 5' -61.7 NC_005882.1 + 207 0.76 0.069783
Target:  5'- aGCCUUGCcuucGGCcUGACGCGGCCcucGCGGg -3'
miRNA:   3'- cCGGAACG----CUGcGCUGCGCCGG---CGCC- -5'
27594 5' -61.7 NC_005882.1 + 2216 0.72 0.124656
Target:  5'- cGGCCUgcaaGCGuucaucgaACGCGAUGCGGUCuuGGa -3'
miRNA:   3'- -CCGGAa---CGC--------UGCGCUGCGCCGGcgCC- -5'
27594 5' -61.7 NC_005882.1 + 3328 0.7 0.171937
Target:  5'- cGCCgcGCGACgGCGGC-CGGCCGaCGa -3'
miRNA:   3'- cCGGaaCGCUG-CGCUGcGCCGGC-GCc -5'
27594 5' -61.7 NC_005882.1 + 3383 0.66 0.346586
Target:  5'- --gCUUGCG-CGCGggcgcuGCGCGGCC-UGGg -3'
miRNA:   3'- ccgGAACGCuGCGC------UGCGCCGGcGCC- -5'
27594 5' -61.7 NC_005882.1 + 3497 0.69 0.211817
Target:  5'- aGGCCc-GCGGCGaGAuucauCGCGGCCGUcaGGa -3'
miRNA:   3'- -CCGGaaCGCUGCgCU-----GCGCCGGCG--CC- -5'
27594 5' -61.7 NC_005882.1 + 3945 0.68 0.228717
Target:  5'- gGGCCUUGUGgagcuGCGCGAaGCGGgCuucCGGg -3'
miRNA:   3'- -CCGGAACGC-----UGCGCUgCGCCgGc--GCC- -5'
27594 5' -61.7 NC_005882.1 + 6462 0.68 0.228717
Target:  5'- cGCCcagGCaGCGCG-CGCGGCCGgccaCGGc -3'
miRNA:   3'- cCGGaa-CGcUGCGCuGCGCCGGC----GCC- -5'
27594 5' -61.7 NC_005882.1 + 8151 0.69 0.196003
Target:  5'- cGGCCgucGCGuCGCGGC-CGGUCG-GGa -3'
miRNA:   3'- -CCGGaa-CGCuGCGCUGcGCCGGCgCC- -5'
27594 5' -61.7 NC_005882.1 + 8206 0.68 0.234598
Target:  5'- cGGCC--GCGACGCGA--CGGCCGaaGa -3'
miRNA:   3'- -CCGGaaCGCUGCGCUgcGCCGGCgcC- -5'
27594 5' -61.7 NC_005882.1 + 8924 0.68 0.234598
Target:  5'- aGCUUgacgGCGAuuuCGUG-CGCcuGGCCGCGGa -3'
miRNA:   3'- cCGGAa---CGCU---GCGCuGCG--CCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 9486 0.67 0.272587
Target:  5'- aGCCgcUGCGauugGCGCGcugGCGGCCGCa- -3'
miRNA:   3'- cCGGa-ACGC----UGCGCug-CGCCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 11746 0.73 0.105815
Target:  5'- aGCCc-GCGAucgagccaguaCGCGACGaCGGCCGCGa -3'
miRNA:   3'- cCGGaaCGCU-----------GCGCUGC-GCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 11897 0.67 0.265929
Target:  5'- cGCCgagGaCGaucaccGCGCGGCGaagcauGGCCGCGGc -3'
miRNA:   3'- cCGGaa-C-GC------UGCGCUGCg-----CCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 11997 0.71 0.142686
Target:  5'- gGGCaCUUGCGcggccACG-GGCGCGGCgGCGc -3'
miRNA:   3'- -CCG-GAACGC-----UGCgCUGCGCCGgCGCc -5'
27594 5' -61.7 NC_005882.1 + 12466 0.68 0.234598
Target:  5'- aGCC--GCGGuucuCGCGGaaaGCGGCCGCGu -3'
miRNA:   3'- cCGGaaCGCU----GCGCUg--CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 12527 0.75 0.078038
Target:  5'- cGGCCagUGUGuCGCGGCgGCGGCCgGCGc -3'
miRNA:   3'- -CCGGa-ACGCuGCGCUG-CGCCGG-CGCc -5'
27594 5' -61.7 NC_005882.1 + 12566 0.66 0.307893
Target:  5'- cGGCgCacugGCGGC-UGGCGCGGUCGCu- -3'
miRNA:   3'- -CCG-Gaa--CGCUGcGCUGCGCCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 12588 0.67 0.300562
Target:  5'- cGGCCgc-CGcCGCGACacacUGGCCGCGc -3'
miRNA:   3'- -CCGGaacGCuGCGCUGc---GCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 13104 0.69 0.205895
Target:  5'- aGCUuguucagUUGCGAUuCGAuguCGCGGCUGCGGc -3'
miRNA:   3'- cCGG-------AACGCUGcGCU---GCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 13782 0.66 0.322963
Target:  5'- uGGCCg-GCcGCGCGAUGCccGGCuCGCa- -3'
miRNA:   3'- -CCGGaaCGcUGCGCUGCG--CCG-GCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.