miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27594 5' -61.7 NC_005882.1 + 28349 0.68 0.232821
Target:  5'- gGGCCaaccaggcgcaguccGCGAUGCG-CGUGGCCGuCGa -3'
miRNA:   3'- -CCGGaa-------------CGCUGCGCuGCGCCGGC-GCc -5'
27594 5' -61.7 NC_005882.1 + 22812 0.69 0.201157
Target:  5'- gGGCCgUGCaaaacuCGCGcAUcCGGCCGCGGc -3'
miRNA:   3'- -CCGGaACGcu----GCGC-UGcGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 15865 0.69 0.206427
Target:  5'- cGCUUUcgucGCaGAuCGCGACGCGGgCGCGa -3'
miRNA:   3'- cCGGAA----CG-CU-GCGCUGCGCCgGCGCc -5'
27594 5' -61.7 NC_005882.1 + 3497 0.69 0.211817
Target:  5'- aGGCCc-GCGGCGaGAuucauCGCGGCCGUcaGGa -3'
miRNA:   3'- -CCGGaaCGCUGCgCU-----GCGCCGGCG--CC- -5'
27594 5' -61.7 NC_005882.1 + 32730 0.69 0.211817
Target:  5'- cGGCgUUGCuGCGCacGACGuUGGCUGCGu -3'
miRNA:   3'- -CCGgAACGcUGCG--CUGC-GCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 36123 0.69 0.217328
Target:  5'- aGGCCaaaaGCGaACGUGACGUGgGCUGCu- -3'
miRNA:   3'- -CCGGaa--CGC-UGCGCUGCGC-CGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 29186 0.69 0.22296
Target:  5'- cGCCgUUGCu-CGCG-UGCGGCCGCu- -3'
miRNA:   3'- cCGG-AACGcuGCGCuGCGCCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 25446 0.69 0.22296
Target:  5'- cGCCUggGgGACGCGaugGCGCGgGCCGUu- -3'
miRNA:   3'- cCGGAa-CgCUGCGC---UGCGC-CGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 3945 0.68 0.228717
Target:  5'- gGGCCUUGUGgagcuGCGCGAaGCGGgCuucCGGg -3'
miRNA:   3'- -CCGGAACGC-----UGCGCUgCGCCgGc--GCC- -5'
27594 5' -61.7 NC_005882.1 + 26938 0.69 0.196003
Target:  5'- cGGCaugggGCgGGCGCGGCcggcaaguucGCGGCCGUGa -3'
miRNA:   3'- -CCGgaa--CG-CUGCGCUG----------CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 8151 0.69 0.196003
Target:  5'- cGGCCgucGCGuCGCGGC-CGGUCG-GGa -3'
miRNA:   3'- -CCGGaa-CGCuGCGCUGcGCCGGCgCC- -5'
27594 5' -61.7 NC_005882.1 + 14128 0.7 0.185556
Target:  5'- aGGCC--GCGAagaacauCGCGACGCuGGcCCGCGc -3'
miRNA:   3'- -CCGGaaCGCU-------GCGCUGCG-CC-GGCGCc -5'
27594 5' -61.7 NC_005882.1 + 31540 0.76 0.069783
Target:  5'- cGGCCagUUGuCGAU-CGACGUGGCCGCGa -3'
miRNA:   3'- -CCGG--AAC-GCUGcGCUGCGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 12527 0.75 0.078038
Target:  5'- cGGCCagUGUGuCGCGGCgGCGGCCgGCGc -3'
miRNA:   3'- -CCGGa-ACGCuGCGCUG-CGCCGG-CGCc -5'
27594 5' -61.7 NC_005882.1 + 31374 0.75 0.082508
Target:  5'- aGCUgguCGGCGUGACGCGGCUGcCGGc -3'
miRNA:   3'- cCGGaacGCUGCGCUGCGCCGGC-GCC- -5'
27594 5' -61.7 NC_005882.1 + 25561 0.74 0.094776
Target:  5'- cGGcCCUUGCGACcCGGC-UGGCgCGCGGc -3'
miRNA:   3'- -CC-GGAACGCUGcGCUGcGCCG-GCGCC- -5'
27594 5' -61.7 NC_005882.1 + 2216 0.72 0.124656
Target:  5'- cGGCCUgcaaGCGuucaucgaACGCGAUGCGGUCuuGGa -3'
miRNA:   3'- -CCGGAa---CGC--------UGCGCUGCGCCGGcgCC- -5'
27594 5' -61.7 NC_005882.1 + 28596 0.7 0.166127
Target:  5'- cGGCUUggcgaacGCGACGaucgggacgauuacCGGCGCaaucgaccgGGCCGCGGg -3'
miRNA:   3'- -CCGGAa------CGCUGC--------------GCUGCG---------CCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 26728 0.7 0.171937
Target:  5'- cGGCCUgauccGCGGCGUGGuCGgcuucgcaaCGGCCGUGa -3'
miRNA:   3'- -CCGGAa----CGCUGCGCU-GC---------GCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 26778 0.7 0.18123
Target:  5'- aGGUC--GCGACGCu-CGCGGCCGgcUGGg -3'
miRNA:   3'- -CCGGaaCGCUGCGcuGCGCCGGC--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.