miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27594 5' -61.7 NC_005882.1 + 18402 1.11 0.000121
Target:  5'- cGGCCUUGCGACGCGACGCGGCCGCGGu -3'
miRNA:   3'- -CCGGAACGCUGCGCUGCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 27587 0.85 0.012579
Target:  5'- cGGCCgccggcaugGCGACGCaGGcCGCGGCCGCGGc -3'
miRNA:   3'- -CCGGaa-------CGCUGCG-CU-GCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 31540 0.76 0.069783
Target:  5'- cGGCCagUUGuCGAU-CGACGUGGCCGCGa -3'
miRNA:   3'- -CCGG--AAC-GCUGcGCUGCGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 207 0.76 0.069783
Target:  5'- aGCCUUGCcuucGGCcUGACGCGGCCcucGCGGg -3'
miRNA:   3'- cCGGAACG----CUGcGCUGCGCCGG---CGCC- -5'
27594 5' -61.7 NC_005882.1 + 12527 0.75 0.078038
Target:  5'- cGGCCagUGUGuCGCGGCgGCGGCCgGCGc -3'
miRNA:   3'- -CCGGa-ACGCuGCGCUG-CGCCGG-CGCc -5'
27594 5' -61.7 NC_005882.1 + 31374 0.75 0.082508
Target:  5'- aGCUgguCGGCGUGACGCGGCUGcCGGc -3'
miRNA:   3'- cCGGaacGCUGCGCUGCGCCGGC-GCC- -5'
27594 5' -61.7 NC_005882.1 + 25731 0.74 0.087222
Target:  5'- cGGCCUgccgaacaGCGcCGauuacgGGCGCGGCCGUGGc -3'
miRNA:   3'- -CCGGAa-------CGCuGCg-----CUGCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 25561 0.74 0.094776
Target:  5'- cGGcCCUUGCGACcCGGC-UGGCgCGCGGc -3'
miRNA:   3'- -CC-GGAACGCUGcGCUGcGCCG-GCGCC- -5'
27594 5' -61.7 NC_005882.1 + 11746 0.73 0.105815
Target:  5'- aGCCc-GCGAucgagccaguaCGCGACGaCGGCCGCGa -3'
miRNA:   3'- cCGGaaCGCU-----------GCGCUGC-GCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 2216 0.72 0.124656
Target:  5'- cGGCCUgcaaGCGuucaucgaACGCGAUGCGGUCuuGGa -3'
miRNA:   3'- -CCGGAa---CGC--------UGCGCUGCGCCGGcgCC- -5'
27594 5' -61.7 NC_005882.1 + 31036 0.72 0.124656
Target:  5'- cGCacaacaUGCGGCGUGGCGCGGUCGauCGGc -3'
miRNA:   3'- cCGga----ACGCUGCGCUGCGCCGGC--GCC- -5'
27594 5' -61.7 NC_005882.1 + 27671 0.72 0.128084
Target:  5'- cGCUgcaGgGACGC--CGCGGCCGCGGc -3'
miRNA:   3'- cCGGaa-CgCUGCGcuGCGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 11997 0.71 0.142686
Target:  5'- gGGCaCUUGCGcggccACG-GGCGCGGCgGCGc -3'
miRNA:   3'- -CCG-GAACGC-----UGCgCUGCGCCGgCGCc -5'
27594 5' -61.7 NC_005882.1 + 28344 0.71 0.142686
Target:  5'- cGCCgaUGUGACGCuGgagaccgccuGCGCGGCCGcCGGc -3'
miRNA:   3'- cCGGa-ACGCUGCG-C----------UGCGCCGGC-GCC- -5'
27594 5' -61.7 NC_005882.1 + 26800 0.71 0.144227
Target:  5'- cGGCCgUUGCGAagccgaccacgcCGCGGaucggccgggauggGCGGCCGCGa -3'
miRNA:   3'- -CCGG-AACGCU------------GCGCUg-------------CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 25110 0.71 0.150545
Target:  5'- uGGCUUUGCGGC-CGGCuCGGgCGcCGGg -3'
miRNA:   3'- -CCGGAACGCUGcGCUGcGCCgGC-GCC- -5'
27594 5' -61.7 NC_005882.1 + 25477 0.71 0.15462
Target:  5'- uGCCUcGCGcGCagcucgucgGCGACGCGGCCGaGGc -3'
miRNA:   3'- cCGGAaCGC-UG---------CGCUGCGCCGGCgCC- -5'
27594 5' -61.7 NC_005882.1 + 28596 0.7 0.166127
Target:  5'- cGGCUUggcgaacGCGACGaucgggacgauuacCGGCGCaaucgaccgGGCCGCGGg -3'
miRNA:   3'- -CCGGAa------CGCUGC--------------GCUGCG---------CCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 3328 0.7 0.171937
Target:  5'- cGCCgcGCGACgGCGGC-CGGCCGaCGa -3'
miRNA:   3'- cCGGaaCGCUG-CGCUGcGCCGGC-GCc -5'
27594 5' -61.7 NC_005882.1 + 26728 0.7 0.171937
Target:  5'- cGGCCUgauccGCGGCGUGGuCGgcuucgcaaCGGCCGUGa -3'
miRNA:   3'- -CCGGAa----CGCUGCGCU-GC---------GCCGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.