Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 27595 | 3' | -55.2 | NC_005882.1 | + | 20393 | 0.67 | 0.475949 |
|
Target: 5'- -cGCGGCGCAacuggaucgcuucGgUCGCUGUcuggacGGCGGCu -3' miRNA: 3'- uaUGCUGUGUa------------CgAGCGACA------CCGCCG- -5' |
|||||||
| 27595 | 3' | -55.2 | NC_005882.1 | + | 32137 | 0.68 | 0.448921 |
|
Target: 5'- cUGCGGCcguACGUGCcugcgcgaUCGUUGUGuCGGCg -3' miRNA: 3'- uAUGCUG---UGUACG--------AGCGACACcGCCG- -5' |
|||||||
| 27595 | 3' | -55.2 | NC_005882.1 | + | 19854 | 0.68 | 0.428719 |
|
Target: 5'- --cCGGCGC--GCUCGCgcGUGGCGuGCu -3' miRNA: 3'- uauGCUGUGuaCGAGCGa-CACCGC-CG- -5' |
|||||||
| 27595 | 3' | -55.2 | NC_005882.1 | + | 8283 | 0.69 | 0.409063 |
|
Target: 5'- -gAgGACGCGUGCggugccgauuUCGUcacucgcuggGUGGCGGCa -3' miRNA: 3'- uaUgCUGUGUACG----------AGCGa---------CACCGCCG- -5' |
|||||||
| 27595 | 3' | -55.2 | NC_005882.1 | + | 23915 | 0.69 | 0.371486 |
|
Target: 5'- cGUACGuCAgGcGUUCGagcgGUGGCGGCa -3' miRNA: 3'- -UAUGCuGUgUaCGAGCga--CACCGCCG- -5' |
|||||||
| 27595 | 3' | -55.2 | NC_005882.1 | + | 14011 | 0.72 | 0.259335 |
|
Target: 5'- cGUGCGGCuucCGUGCUCGCcuUGaucGCGGCg -3' miRNA: 3'- -UAUGCUGu--GUACGAGCG--ACac-CGCCG- -5' |
|||||||
| 27595 | 3' | -55.2 | NC_005882.1 | + | 19653 | 1.1 | 0.000406 |
|
Target: 5'- cAUACGACACAUGCUCGCUGUGGCGGCg -3' miRNA: 3'- -UAUGCUGUGUACGAGCGACACCGCCG- -5' |
|||||||
| 27595 | 3' | -55.2 | NC_005882.1 | + | 27895 | 0.66 | 0.590777 |
|
Target: 5'- uUGCGaACACGUcaGCUC-CUGUacGcGCGGCg -3' miRNA: 3'- uAUGC-UGUGUA--CGAGcGACA--C-CGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home