Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27607 | 5' | -54 | NC_005882.1 | + | 34697 | 0.68 | 0.548169 |
Target: 5'- cGC-CCGCGCCUGuAGUCCCG-AGAUu- -3' miRNA: 3'- -CGcGGCGCGGGC-UUAGGGUaUUUGuc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 32261 | 0.68 | 0.570559 |
Target: 5'- -aGCaCGCGCagugCGAGUCCCG---GCAGg -3' miRNA: 3'- cgCG-GCGCGg---GCUUAGGGUauuUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 25508 | 0.68 | 0.570559 |
Target: 5'- gGC-CCGCGCCauCGcGUCCCccAGGCGGg -3' miRNA: 3'- -CGcGGCGCGG--GCuUAGGGuaUUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 15472 | 0.67 | 0.593164 |
Target: 5'- uGCcCCGCGCgUCGAAggcgccgCCCGUGAagcGCGGg -3' miRNA: 3'- -CGcGGCGCG-GGCUUa------GGGUAUU---UGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 27230 | 0.67 | 0.615911 |
Target: 5'- aGCG-CGCGCCCGAG-CCa--GAGCAc -3' miRNA: 3'- -CGCgGCGCGGGCUUaGGguaUUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 21653 | 0.68 | 0.526061 |
Target: 5'- aGCGCgGCGCCU---UCCgGUcGACGGg -3' miRNA: 3'- -CGCGgCGCGGGcuuAGGgUAuUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 27657 | 0.69 | 0.504299 |
Target: 5'- cGCgGCCGCgGCCUGcGUCgCCAUGccGGCGGc -3' miRNA: 3'- -CG-CGGCG-CGGGCuUAG-GGUAU--UUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 26025 | 0.69 | 0.493563 |
Target: 5'- aGCGCCGCgucGCCCuuGAUCCCG--AGCGu -3' miRNA: 3'- -CGCGGCG---CGGGc-UUAGGGUauUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 25628 | 0.7 | 0.462015 |
Target: 5'- gGCGCCGCGCgccagCCGggUCgCAaGGGCc- -3' miRNA: 3'- -CGCGGCGCG-----GGCuuAGgGUaUUUGuc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 22448 | 0.7 | 0.411924 |
Target: 5'- gGCGCUGCGgCCGGcuucagguagCCCAUcgcGAGCAGc -3' miRNA: 3'- -CGCGGCGCgGGCUua--------GGGUA---UUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 35355 | 0.72 | 0.322512 |
Target: 5'- gGgGCCaCGCCaaCGggUCCUGUGGACAGu -3' miRNA: 3'- -CgCGGcGCGG--GCuuAGGGUAUUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 26994 | 0.73 | 0.306464 |
Target: 5'- -gGCCGCGCCCGcg-CCCAUGccgaaaaucugaAACAc -3' miRNA: 3'- cgCGGCGCGGGCuuaGGGUAU------------UUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 23778 | 0.73 | 0.297901 |
Target: 5'- -aGCUGCGCCCGAA-CCCGUucaccgacucgacGAGCGa -3' miRNA: 3'- cgCGGCGCGGGCUUaGGGUA-------------UUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 27057 | 1.12 | 0.000496 |
Target: 5'- cGCGCCGCGCCCGAAUCCCAUAAACAGg -3' miRNA: 3'- -CGCGGCGCGGGCUUAGGGUAUUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 16930 | 0.67 | 0.615911 |
Target: 5'- cGCgGCCG-GCCUGGAUCUCGUcGACc- -3' miRNA: 3'- -CG-CGGCgCGGGCUUAGGGUAuUUGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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