miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27607 5' -54 NC_005882.1 + 33043 0.76 0.199749
Target:  5'- uCGCCGCGCCCGAccCgCAUucGCAGu -3'
miRNA:   3'- cGCGGCGCGGGCUuaGgGUAuuUGUC- -5'
27607 5' -54 NC_005882.1 + 6173 0.67 0.604525
Target:  5'- cCGCCGCGUcaCCGA---CCGUAuACAGg -3'
miRNA:   3'- cGCGGCGCG--GGCUuagGGUAUuUGUC- -5'
27607 5' -54 NC_005882.1 + 34598 0.67 0.604525
Target:  5'- gGUGCCGCGuUCCGAAUCgCA--AACu- -3'
miRNA:   3'- -CGCGGCGC-GGGCUUAGgGUauUUGuc -5'
27607 5' -54 NC_005882.1 + 13034 0.67 0.638718
Target:  5'- cGCaGCCGCGacaUCGAAUCgCAacUGAACAa -3'
miRNA:   3'- -CG-CGGCGCg--GGCUUAGgGU--AUUUGUc -5'
27607 5' -54 NC_005882.1 + 27609 0.66 0.650118
Target:  5'- -gGCCGCGgCCGcggcGUCCCu---GCAGc -3'
miRNA:   3'- cgCGGCGCgGGCu---UAGGGuauuUGUC- -5'
27607 5' -54 NC_005882.1 + 16336 0.66 0.666045
Target:  5'- gGUGCCGCGCCaggaggcgacguaucUGAA-CCCGU--ACGGc -3'
miRNA:   3'- -CGCGGCGCGG---------------GCUUaGGGUAuuUGUC- -5'
27607 5' -54 NC_005882.1 + 15767 0.66 0.672852
Target:  5'- gGCGCCgcuccaGCGUCCGAAUgacagaggguuaCgCAUGAGCAa -3'
miRNA:   3'- -CGCGG------CGCGGGCUUA------------GgGUAUUUGUc -5'
27607 5' -54 NC_005882.1 + 8698 0.66 0.684163
Target:  5'- gGCGCUGCucgucgccaacuGCCCGA-UCCgAU--ACAGg -3'
miRNA:   3'- -CGCGGCG------------CGGGCUuAGGgUAuuUGUC- -5'
27607 5' -54 NC_005882.1 + 27109 0.66 0.694298
Target:  5'- aUGCUGCugGCCCGcGUCCUgggcggccagcucGUGAACGGc -3'
miRNA:   3'- cGCGGCG--CGGGCuUAGGG-------------UAUUUGUC- -5'
27607 5' -54 NC_005882.1 + 17040 0.67 0.593164
Target:  5'- aGCGCCcgaccaggacGCGCUCGAcgCCgCAcUGAACAc -3'
miRNA:   3'- -CGCGG----------CGCGGGCUuaGG-GU-AUUUGUc -5'
27607 5' -54 NC_005882.1 + 1702 0.68 0.537076
Target:  5'- cGCGCCcaCGCugaauacgCCGAAUCCCGUcAGCGu -3'
miRNA:   3'- -CGCGGc-GCG--------GGCUUAGGGUAuUUGUc -5'
27607 5' -54 NC_005882.1 + 21607 0.73 0.276219
Target:  5'- gGCGCCGCGCucCCGGAcaCCGUGucGCAGa -3'
miRNA:   3'- -CGCGGCGCG--GGCUUagGGUAUu-UGUC- -5'
27607 5' -54 NC_005882.1 + 20930 0.73 0.291034
Target:  5'- uCGCuCGCgGCaCCGAAUCCCGUAcuGACAc -3'
miRNA:   3'- cGCG-GCG-CG-GGCUUAGGGUAU--UUGUc -5'
27607 5' -54 NC_005882.1 + 17725 0.72 0.347744
Target:  5'- cCGCaCGCGCCCGAG-CCaucgggcaAUGAACGGc -3'
miRNA:   3'- cGCG-GCGCGGGCUUaGGg-------UAUUUGUC- -5'
27607 5' -54 NC_005882.1 + 4159 0.71 0.392848
Target:  5'- uUGCCGcCGCCCGAuUCCgCGacGACGGc -3'
miRNA:   3'- cGCGGC-GCGGGCUuAGG-GUauUUGUC- -5'
27607 5' -54 NC_005882.1 + 14409 0.7 0.462015
Target:  5'- cGCGCCGCGUUgGcuuGUCCUGgggcgAAGCAGc -3'
miRNA:   3'- -CGCGGCGCGGgCu--UAGGGUa----UUUGUC- -5'
27607 5' -54 NC_005882.1 + 12766 0.69 0.493563
Target:  5'- -gGCaCGCGCUCGAAUCCgAcgaacugAAACGGa -3'
miRNA:   3'- cgCG-GCGCGGGCUUAGGgUa------UUUGUC- -5'
27607 5' -54 NC_005882.1 + 25661 0.69 0.515133
Target:  5'- -gGCCGCGCCCGuAAUCggcgCUGUucGGCAGg -3'
miRNA:   3'- cgCGGCGCGGGC-UUAG----GGUAu-UUGUC- -5'
27607 5' -54 NC_005882.1 + 11934 0.68 0.533763
Target:  5'- cCGCCGCGCCCGuggccgcgcaagugCCCGccgAGGCGc -3'
miRNA:   3'- cGCGGCGCGGGCuua-----------GGGUa--UUUGUc -5'
27607 5' -54 NC_005882.1 + 16930 0.67 0.615911
Target:  5'- cGCgGCCG-GCCUGGAUCUCGUcGACc- -3'
miRNA:   3'- -CG-CGGCgCGGGCUUAGGGUAuUUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.