Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27607 | 5' | -54 | NC_005882.1 | + | 1702 | 0.68 | 0.537076 |
Target: 5'- cGCGCCcaCGCugaauacgCCGAAUCCCGUcAGCGu -3' miRNA: 3'- -CGCGGc-GCG--------GGCUUAGGGUAuUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 4159 | 0.71 | 0.392848 |
Target: 5'- uUGCCGcCGCCCGAuUCCgCGacGACGGc -3' miRNA: 3'- cGCGGC-GCGGGCUuAGG-GUauUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 6173 | 0.67 | 0.604525 |
Target: 5'- cCGCCGCGUcaCCGA---CCGUAuACAGg -3' miRNA: 3'- cGCGGCGCG--GGCUuagGGUAUuUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 8698 | 0.66 | 0.684163 |
Target: 5'- gGCGCUGCucgucgccaacuGCCCGA-UCCgAU--ACAGg -3' miRNA: 3'- -CGCGGCG------------CGGGCUuAGGgUAuuUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 11934 | 0.68 | 0.533763 |
Target: 5'- cCGCCGCGCCCGuggccgcgcaagugCCCGccgAGGCGc -3' miRNA: 3'- cGCGGCGCGGGCuua-----------GGGUa--UUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 12766 | 0.69 | 0.493563 |
Target: 5'- -gGCaCGCGCUCGAAUCCgAcgaacugAAACGGa -3' miRNA: 3'- cgCG-GCGCGGGCUUAGGgUa------UUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 13034 | 0.67 | 0.638718 |
Target: 5'- cGCaGCCGCGacaUCGAAUCgCAacUGAACAa -3' miRNA: 3'- -CG-CGGCGCg--GGCUUAGgGU--AUUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 14409 | 0.7 | 0.462015 |
Target: 5'- cGCGCCGCGUUgGcuuGUCCUGgggcgAAGCAGc -3' miRNA: 3'- -CGCGGCGCGGgCu--UAGGGUa----UUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 15472 | 0.67 | 0.593164 |
Target: 5'- uGCcCCGCGCgUCGAAggcgccgCCCGUGAagcGCGGg -3' miRNA: 3'- -CGcGGCGCG-GGCUUa------GGGUAUU---UGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 15767 | 0.66 | 0.672852 |
Target: 5'- gGCGCCgcuccaGCGUCCGAAUgacagaggguuaCgCAUGAGCAa -3' miRNA: 3'- -CGCGG------CGCGGGCUUA------------GgGUAUUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 16336 | 0.66 | 0.666045 |
Target: 5'- gGUGCCGCGCCaggaggcgacguaucUGAA-CCCGU--ACGGc -3' miRNA: 3'- -CGCGGCGCGG---------------GCUUaGGGUAuuUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 16930 | 0.67 | 0.615911 |
Target: 5'- cGCgGCCG-GCCUGGAUCUCGUcGACc- -3' miRNA: 3'- -CG-CGGCgCGGGCUUAGGGUAuUUGuc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 17040 | 0.67 | 0.593164 |
Target: 5'- aGCGCCcgaccaggacGCGCUCGAcgCCgCAcUGAACAc -3' miRNA: 3'- -CGCGG----------CGCGGGCUuaGG-GU-AUUUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 17725 | 0.72 | 0.347744 |
Target: 5'- cCGCaCGCGCCCGAG-CCaucgggcaAUGAACGGc -3' miRNA: 3'- cGCG-GCGCGGGCUUaGGg-------UAUUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 19249 | 0.68 | 0.526061 |
Target: 5'- gGCgGCUGCGCaCCGAGgaaCCCGacguGACGGa -3' miRNA: 3'- -CG-CGGCGCG-GGCUUa--GGGUau--UUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 20930 | 0.73 | 0.291034 |
Target: 5'- uCGCuCGCgGCaCCGAAUCCCGUAcuGACAc -3' miRNA: 3'- cGCG-GCG-CG-GGCUUAGGGUAU--UUGUc -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 21607 | 0.73 | 0.276219 |
Target: 5'- gGCGCCGCGCucCCGGAcaCCGUGucGCAGa -3' miRNA: 3'- -CGCGGCGCG--GGCUUagGGUAUu-UGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 21653 | 0.68 | 0.526061 |
Target: 5'- aGCGCgGCGCCU---UCCgGUcGACGGg -3' miRNA: 3'- -CGCGgCGCGGGcuuAGGgUAuUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 22448 | 0.7 | 0.411924 |
Target: 5'- gGCGCUGCGgCCGGcuucagguagCCCAUcgcGAGCAGc -3' miRNA: 3'- -CGCGGCGCgGGCUua--------GGGUA---UUUGUC- -5' |
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27607 | 5' | -54 | NC_005882.1 | + | 23778 | 0.73 | 0.297901 |
Target: 5'- -aGCUGCGCCCGAA-CCCGUucaccgacucgacGAGCGa -3' miRNA: 3'- cgCGGCGCGGGCUUaGGGUA-------------UUUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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