miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27630 5' -54.6 NC_005882.1 + 32978 0.66 0.648369
Target:  5'- cGGCGGCCgcacGCgcuaccugaAGGcGCAGGUCGAgCAg -3'
miRNA:   3'- -CCGCUGGa---CG---------UCUcUGUUCAGCUgGU- -5'
27630 5' -54.6 NC_005882.1 + 20443 0.66 0.625643
Target:  5'- cGCGGCCgGCAGcGAUccGGUCGGCg- -3'
miRNA:   3'- cCGCUGGaCGUCuCUGu-UCAGCUGgu -5'
27630 5' -54.6 NC_005882.1 + 2191 0.67 0.602942
Target:  5'- aGGCGAUCgucacGCAGGcguuugcgaccGACAAGgaaGGCCAg -3'
miRNA:   3'- -CCGCUGGa----CGUCU-----------CUGUUCag-CUGGU- -5'
27630 5' -54.6 NC_005882.1 + 22115 0.67 0.602942
Target:  5'- aGCGACaaGUuucucGGCGAGUCGGCCGg -3'
miRNA:   3'- cCGCUGgaCGucu--CUGUUCAGCUGGU- -5'
27630 5' -54.6 NC_005882.1 + 3695 0.67 0.591626
Target:  5'- aGGCGcggGCCgucgaGCGGGGcCAGcUCGACCAu -3'
miRNA:   3'- -CCGC---UGGa----CGUCUCuGUUcAGCUGGU- -5'
27630 5' -54.6 NC_005882.1 + 18808 0.67 0.591626
Target:  5'- cGCGA--UGCAGGGagcgcaGCAGGUCGaACCAa -3'
miRNA:   3'- cCGCUggACGUCUC------UGUUCAGC-UGGU- -5'
27630 5' -54.6 NC_005882.1 + 22975 0.67 0.557934
Target:  5'- aGGCGACCUacgacuacGCGGAcccGACGaaGGUcaCGGCCGc -3'
miRNA:   3'- -CCGCUGGA--------CGUCU---CUGU--UCA--GCUGGU- -5'
27630 5' -54.6 NC_005882.1 + 19043 0.68 0.491395
Target:  5'- cGGCaACCUGCAGGccGAacccaccCAGGUCGAUCc -3'
miRNA:   3'- -CCGcUGGACGUCU--CU-------GUUCAGCUGGu -5'
27630 5' -54.6 NC_005882.1 + 16193 0.69 0.444747
Target:  5'- cGGCGuCCaGCAucucggucacgauccGAGACAGGUCGAgguCCGc -3'
miRNA:   3'- -CCGCuGGaCGU---------------CUCUGUUCAGCU---GGU- -5'
27630 5' -54.6 NC_005882.1 + 16948 0.69 0.44072
Target:  5'- uGCGuacaACCUGCAGgaugcgaccuGGACGAG-CGGCCGc -3'
miRNA:   3'- cCGC----UGGACGUC----------UCUGUUCaGCUGGU- -5'
27630 5' -54.6 NC_005882.1 + 17932 0.7 0.391277
Target:  5'- cGGCGAgCUGCGcGAGgucgcgacguuccGCAcGUCGACCc -3'
miRNA:   3'- -CCGCUgGACGU-CUC-------------UGUuCAGCUGGu -5'
27630 5' -54.6 NC_005882.1 + 17350 0.71 0.355992
Target:  5'- cGGCGGCagcuucaUGCAGuAGcCgAGGUCGACCGc -3'
miRNA:   3'- -CCGCUGg------ACGUC-UCuG-UUCAGCUGGU- -5'
27630 5' -54.6 NC_005882.1 + 26008 0.73 0.268939
Target:  5'- cGCGGCCUaCGGcGGCAAGcUCGGCCGg -3'
miRNA:   3'- cCGCUGGAcGUCuCUGUUC-AGCUGGU- -5'
27630 5' -54.6 NC_005882.1 + 670 1.11 0.000523
Target:  5'- gGGCGACCUGCAGAGACAAGUCGACCAg -3'
miRNA:   3'- -CCGCUGGACGUCUCUGUUCAGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.