miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27642 3' -55.4 NC_005882.1 + 23553 0.66 0.577914
Target:  5'- cGCCUGuGG-GGCAaCCGCAcgGCGg-- -3'
miRNA:   3'- -CGGAC-CCgCUGUcGGUGUuaCGCaag -5'
27642 3' -55.4 NC_005882.1 + 22954 0.66 0.577914
Target:  5'- cGCCgGGuGCGACGGCgGCcaagGCGa-- -3'
miRNA:   3'- -CGGaCC-CGCUGUCGgUGuua-CGCaag -5'
27642 3' -55.4 NC_005882.1 + 25974 0.66 0.555413
Target:  5'- ---aGGGCGACgcGGCgCugAAggagGCGUUCa -3'
miRNA:   3'- cggaCCCGCUG--UCG-GugUUa---CGCAAG- -5'
27642 3' -55.4 NC_005882.1 + 25716 0.66 0.544258
Target:  5'- cGCCgauuacGGGCGcggccgugGCAGCCGCcGUcGCGUa- -3'
miRNA:   3'- -CGGa-----CCCGC--------UGUCGGUGuUA-CGCAag -5'
27642 3' -55.4 NC_005882.1 + 12006 0.66 0.533176
Target:  5'- cGCCUcGGCGggcacuugcGCGGCCACGGgcgcgGCGg-- -3'
miRNA:   3'- -CGGAcCCGC---------UGUCGGUGUUa----CGCaag -5'
27642 3' -55.4 NC_005882.1 + 26768 0.67 0.489735
Target:  5'- gGCC-GGGaugGGCGGCCGCGAacUGCGc-- -3'
miRNA:   3'- -CGGaCCCg--CUGUCGGUGUU--ACGCaag -5'
27642 3' -55.4 NC_005882.1 + 25446 0.67 0.489735
Target:  5'- cGCCUGGGgGACgcgauggcgcgGGCCGuugcgcaucCGAUGCGc-- -3'
miRNA:   3'- -CGGACCCgCUG-----------UCGGU---------GUUACGCaag -5'
27642 3' -55.4 NC_005882.1 + 19572 0.67 0.47913
Target:  5'- -gCUGGGUGuuuuCGGCCucCAGUGCGg-- -3'
miRNA:   3'- cgGACCCGCu---GUCGGu-GUUACGCaag -5'
27642 3' -55.4 NC_005882.1 + 24972 0.68 0.448019
Target:  5'- gGCaCUGGGuCGAC-GCCGCGGaGCGg-- -3'
miRNA:   3'- -CG-GACCC-GCUGuCGGUGUUaCGCaag -5'
27642 3' -55.4 NC_005882.1 + 29855 0.68 0.427911
Target:  5'- uGCg-GGGCGACacgaagcuGGCCGcCGGUGCGUcgaUCg -3'
miRNA:   3'- -CGgaCCCGCUG--------UCGGU-GUUACGCA---AG- -5'
27642 3' -55.4 NC_005882.1 + 15815 0.69 0.408347
Target:  5'- -gCUGGaGCGGCGccGCCGCGAcuUGCGgUCa -3'
miRNA:   3'- cgGACC-CGCUGU--CGGUGUU--ACGCaAG- -5'
27642 3' -55.4 NC_005882.1 + 28345 0.7 0.35314
Target:  5'- aCCUGGGCcaaccaggcGCAGuCCGCGAUGCGc-- -3'
miRNA:   3'- cGGACCCGc--------UGUC-GGUGUUACGCaag -5'
27642 3' -55.4 NC_005882.1 + 790 0.71 0.295682
Target:  5'- uGCCUGGGCGGaacugAGCCAUucgaGCGcgUCg -3'
miRNA:   3'- -CGGACCCGCUg----UCGGUGuua-CGCa-AG- -5'
27642 3' -55.4 NC_005882.1 + 5210 0.74 0.191539
Target:  5'- aCCUGGGCGGCAucgucacGCCACGGauUGCGc-- -3'
miRNA:   3'- cGGACCCGCUGU-------CGGUGUU--ACGCaag -5'
27642 3' -55.4 NC_005882.1 + 27140 0.78 0.093476
Target:  5'- cCCUGGGCGAgCAGCCGCA--GCGggCc -3'
miRNA:   3'- cGGACCCGCU-GUCGGUGUuaCGCaaG- -5'
27642 3' -55.4 NC_005882.1 + 6417 1.12 0.000304
Target:  5'- uGCCUGGGCGACAGCCACAAUGCGUUCg -3'
miRNA:   3'- -CGGACCCGCUGUCGGUGUUACGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.