miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27665 3' -53.9 NC_005882.1 + 12185 0.66 0.742547
Target:  5'- cCCGCgauCCaGUCGACG-GUCGAgggCa -3'
miRNA:   3'- -GGCGauuGGaCAGCUGCuCGGCUa--Gc -5'
27665 3' -53.9 NC_005882.1 + 25395 0.66 0.731813
Target:  5'- aCGCUGaaugGCCUcggccgcgucGcCGACGAGCUGcgCGc -3'
miRNA:   3'- gGCGAU----UGGA----------CaGCUGCUCGGCuaGC- -5'
27665 3' -53.9 NC_005882.1 + 6336 0.66 0.731813
Target:  5'- aCGCaaacGCCgUGUCGAC--GCCGGUCa -3'
miRNA:   3'- gGCGau--UGG-ACAGCUGcuCGGCUAGc -5'
27665 3' -53.9 NC_005882.1 + 231 0.66 0.720973
Target:  5'- aCCGUUGACCacUGUCuccucGCGAGCCuugccuUCGg -3'
miRNA:   3'- -GGCGAUUGG--ACAGc----UGCUCGGcu----AGC- -5'
27665 3' -53.9 NC_005882.1 + 15059 0.66 0.699031
Target:  5'- gCGCauGgCUGUCGcGCGcGCUGAUCGa -3'
miRNA:   3'- gGCGauUgGACAGC-UGCuCGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 21318 0.66 0.699031
Target:  5'- gCGCgUAGCCguUCGAUGcGCCGGUUGc -3'
miRNA:   3'- gGCG-AUUGGacAGCUGCuCGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 14147 0.66 0.699031
Target:  5'- aCGUUcGCCUGgaUCGGCGucuucGUCGGUCGc -3'
miRNA:   3'- gGCGAuUGGAC--AGCUGCu----CGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 23858 0.66 0.687952
Target:  5'- aCCGCUcgaacGCCUGaCGuACGAGaCCGAgaUCa -3'
miRNA:   3'- -GGCGAu----UGGACaGC-UGCUC-GGCU--AGc -5'
27665 3' -53.9 NC_005882.1 + 353 0.66 0.687952
Target:  5'- uCCGC-AGCC-GUCGAUGuaauGCCGcagaAUCGg -3'
miRNA:   3'- -GGCGaUUGGaCAGCUGCu---CGGC----UAGC- -5'
27665 3' -53.9 NC_005882.1 + 15717 0.66 0.687952
Target:  5'- gCGCUuGCC-GUCGucCuGGCCGGUCGc -3'
miRNA:   3'- gGCGAuUGGaCAGCu-GcUCGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 31947 0.67 0.676818
Target:  5'- aCGCgacAACCUGacCGACGAGC--GUCGg -3'
miRNA:   3'- gGCGa--UUGGACa-GCUGCUCGgcUAGC- -5'
27665 3' -53.9 NC_005882.1 + 8792 0.67 0.676818
Target:  5'- gCCGaUGACCgggcUGUCGACGugguGGCCGAa-- -3'
miRNA:   3'- -GGCgAUUGG----ACAGCUGC----UCGGCUagc -5'
27665 3' -53.9 NC_005882.1 + 4705 0.67 0.676818
Target:  5'- gCUGUUGACCcGcUCG-CGGGCCGGUa- -3'
miRNA:   3'- -GGCGAUUGGaC-AGCuGCUCGGCUAgc -5'
27665 3' -53.9 NC_005882.1 + 14415 0.67 0.665639
Target:  5'- gCGUUGGCUUGUCcuggGGCGAagcaGCCGAUUc -3'
miRNA:   3'- gGCGAUUGGACAG----CUGCU----CGGCUAGc -5'
27665 3' -53.9 NC_005882.1 + 24820 0.67 0.654427
Target:  5'- gCCGCUu-CgaGUCGGCGAgGUCGAguUCGc -3'
miRNA:   3'- -GGCGAuuGgaCAGCUGCU-CGGCU--AGC- -5'
27665 3' -53.9 NC_005882.1 + 31358 0.67 0.654427
Target:  5'- aUCGaCUA-CCU--UGGCGAGCUGGUCGg -3'
miRNA:   3'- -GGC-GAUuGGAcaGCUGCUCGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 16906 0.67 0.64207
Target:  5'- cCUGUU--CCUGUUcccacaugucgaaGACGGGUCGAUCGg -3'
miRNA:   3'- -GGCGAuuGGACAG-------------CUGCUCGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 23282 0.68 0.61846
Target:  5'- cCCGCgcccggccagcGCCUGcgCGAgCGucguGCCGAUCGg -3'
miRNA:   3'- -GGCGau---------UGGACa-GCU-GCu---CGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 21132 0.68 0.587079
Target:  5'- aCCGCcga--UGUCGGCGAgcaagcGCCGGUCa -3'
miRNA:   3'- -GGCGauuggACAGCUGCU------CGGCUAGc -5'
27665 3' -53.9 NC_005882.1 + 18462 0.68 0.587079
Target:  5'- gCCGCgauucACCaGuUCGGCGggcaAGCCGGUCGc -3'
miRNA:   3'- -GGCGau---UGGaC-AGCUGC----UCGGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.