miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27665 5' -64.5 NC_005882.1 + 15668 0.66 0.215244
Target:  5'- aCGCC-CUuGAUgACCUGuacGGCGCGCAg -3'
miRNA:   3'- -GCGGaGGcCUGgUGGGCu--CCGCGCGU- -5'
27665 5' -64.5 NC_005882.1 + 21754 0.66 0.209808
Target:  5'- gCGUCgCCGGGCCGCUCGGGuCGC-CGa -3'
miRNA:   3'- -GCGGaGGCCUGGUGGGCUCcGCGcGU- -5'
27665 5' -64.5 NC_005882.1 + 2757 0.66 0.204491
Target:  5'- aGCgUCCGGACCACaagcccgaaaaCCGAcucgcugaaGGCG-GCAa -3'
miRNA:   3'- gCGgAGGCCUGGUG-----------GGCU---------CCGCgCGU- -5'
27665 5' -64.5 NC_005882.1 + 10706 0.66 0.199291
Target:  5'- cCGCUcgaUCCGGuAUCACaaCCGccGGCGCGCGu -3'
miRNA:   3'- -GCGG---AGGCC-UGGUG--GGCu-CCGCGCGU- -5'
27665 5' -64.5 NC_005882.1 + 22929 0.67 0.194206
Target:  5'- uGCCUUCGGcguacgucguGCCGCCCGAGuCGUucuucaGCAc -3'
miRNA:   3'- gCGGAGGCC----------UGGUGGGCUCcGCG------CGU- -5'
27665 5' -64.5 NC_005882.1 + 32103 0.67 0.193704
Target:  5'- aGCCUaCCGaACCgaucgugccgccgGCCUGGGGCGCGa- -3'
miRNA:   3'- gCGGA-GGCcUGG-------------UGGGCUCCGCGCgu -5'
27665 5' -64.5 NC_005882.1 + 7481 0.67 0.189235
Target:  5'- gCGCCaggacucggCgGGcACCGCCUgGAGaGCGCGCAa -3'
miRNA:   3'- -GCGGa--------GgCC-UGGUGGG-CUC-CGCGCGU- -5'
27665 5' -64.5 NC_005882.1 + 12600 0.67 0.184377
Target:  5'- uCGCCgcagcgCCGGccGCCGCCgCGAcacacuGGCcGCGCGa -3'
miRNA:   3'- -GCGGa-----GGCC--UGGUGG-GCU------CCG-CGCGU- -5'
27665 5' -64.5 NC_005882.1 + 11934 0.67 0.174989
Target:  5'- cCGCCgcgcCCGuGGCCGCgcaagugcccgCCGAGGCGCugGCu -3'
miRNA:   3'- -GCGGa---GGC-CUGGUG-----------GGCUCCGCG--CGu -5'
27665 5' -64.5 NC_005882.1 + 2135 0.67 0.17001
Target:  5'- aCGCCUgCGugacGAUCGCCuggauuuCGGGGCGUGCGu -3'
miRNA:   3'- -GCGGAgGC----CUGGUGG-------GCUCCGCGCGU- -5'
27665 5' -64.5 NC_005882.1 + 32618 0.68 0.16603
Target:  5'- aGCCUaggcgCCGaaucacuucucuGACCGCCCaGGGCGUGCc -3'
miRNA:   3'- gCGGA-----GGC------------CUGGUGGGcUCCGCGCGu -5'
27665 5' -64.5 NC_005882.1 + 22486 0.68 0.161706
Target:  5'- gGuCUUCCGG--CACgCUGGGGCGCGCGg -3'
miRNA:   3'- gC-GGAGGCCugGUG-GGCUCCGCGCGU- -5'
27665 5' -64.5 NC_005882.1 + 35421 0.68 0.157485
Target:  5'- gCGCCUCCGGGaCGCuuGAGaaauaCGCGUg -3'
miRNA:   3'- -GCGGAGGCCUgGUGggCUCc----GCGCGu -5'
27665 5' -64.5 NC_005882.1 + 20689 0.68 0.153363
Target:  5'- cCGCUUCaCGGA-CAUCUGGGGCGC-CAa -3'
miRNA:   3'- -GCGGAG-GCCUgGUGGGCUCCGCGcGU- -5'
27665 5' -64.5 NC_005882.1 + 31192 0.69 0.127154
Target:  5'- gGCCgagaUCGuGGCCgACUaCGAGGCGCGCAc -3'
miRNA:   3'- gCGGa---GGC-CUGG-UGG-GCUCCGCGCGU- -5'
27665 5' -64.5 NC_005882.1 + 5195 0.69 0.127154
Target:  5'- uCGCCagUCaGGACCACCUG-GGCG-GCAu -3'
miRNA:   3'- -GCGG--AGgCCUGGUGGGCuCCGCgCGU- -5'
27665 5' -64.5 NC_005882.1 + 23202 0.69 0.127154
Target:  5'- uCGCCUCCagcucGACCGagaCCGAGuucuGCGUGCAg -3'
miRNA:   3'- -GCGGAGGc----CUGGUg--GGCUC----CGCGCGU- -5'
27665 5' -64.5 NC_005882.1 + 18716 0.75 0.045617
Target:  5'- gCGCCUCgGGugguCCgGAGGCGCGCAg -3'
miRNA:   3'- -GCGGAGgCCugguGGgCUCCGCGCGU- -5'
27665 5' -64.5 NC_005882.1 + 18657 1.08 0.000105
Target:  5'- gCGCCUCCGGACCACCCGAGGCGCGCAa -3'
miRNA:   3'- -GCGGAGGCCUGGUGGGCUCCGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.