miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 10447 0.68 0.602491
Target:  5'- uCAGUgcuugCGUCG-UGCGCUGAgaUCGcGCCa -3'
miRNA:   3'- cGUCAa----GCAGCuGCGCGGCU--AGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 10889 0.67 0.634888
Target:  5'- -gGGUUCGUCGcaGCGCGCgCGGgcgcaugcggauuUCGcacGCCa -3'
miRNA:   3'- cgUCAAGCAGC--UGCGCG-GCU-------------AGC---UGG- -5'
27675 3' -54.1 NC_005882.1 + 11988 0.66 0.735152
Target:  5'- cGCGGccaCGggcgCGGCgGCGCCGAgcaacgCGACg -3'
miRNA:   3'- -CGUCaa-GCa---GCUG-CGCGGCUa-----GCUGg -5'
27675 3' -54.1 NC_005882.1 + 12324 0.72 0.385697
Target:  5'- uCAGcgCGUgacggcugcCGGCgGCGCCGAUCGGCa -3'
miRNA:   3'- cGUCaaGCA---------GCUG-CGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 12378 0.7 0.48333
Target:  5'- gGCAGc-CGUC-ACGCGCUGAUCgcgauaGACCc -3'
miRNA:   3'- -CGUCaaGCAGcUGCGCGGCUAG------CUGG- -5'
27675 3' -54.1 NC_005882.1 + 12463 0.68 0.591359
Target:  5'- cGCGGUUC-UCGcggaaagcggccGCGUGCCGGcCGGCg -3'
miRNA:   3'- -CGUCAAGcAGC------------UGCGCGGCUaGCUGg -5'
27675 3' -54.1 NC_005882.1 + 12718 0.73 0.309711
Target:  5'- cGCAGcgCGcggCGGCGCucGCCGG-CGACCu -3'
miRNA:   3'- -CGUCaaGCa--GCUGCG--CGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12827 0.75 0.258891
Target:  5'- uCAGUUCGUCGgauucgagcGCGUGCCGGgcuucUCGGCg -3'
miRNA:   3'- cGUCAAGCAGC---------UGCGCGGCU-----AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 12947 0.69 0.558211
Target:  5'- aGCuGUUgCGcCGGCccGCGCCGAU-GACCc -3'
miRNA:   3'- -CGuCAA-GCaGCUG--CGCGGCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 14270 0.67 0.647184
Target:  5'- ----cUUGUCGACG-GCCGcggCGGCCg -3'
miRNA:   3'- cgucaAGCAGCUGCgCGGCua-GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 14300 0.7 0.493753
Target:  5'- uGCAGgaugacgacCGUCGAaaccCGUGCgGAUCGugCg -3'
miRNA:   3'- -CGUCaa-------GCAGCU----GCGCGgCUAGCugG- -5'
27675 3' -54.1 NC_005882.1 + 15060 0.72 0.359047
Target:  5'- cGCAuGgcUGUCGcGCGCGCUGAUCGAg- -3'
miRNA:   3'- -CGU-CaaGCAGC-UGCGCGGCUAGCUgg -5'
27675 3' -54.1 NC_005882.1 + 15274 0.66 0.735152
Target:  5'- aGCGGg-CGUCGACcgggaGCGCCGugagcagCgGGCCg -3'
miRNA:   3'- -CGUCaaGCAGCUG-----CGCGGCua-----G-CUGG- -5'
27675 3' -54.1 NC_005882.1 + 15412 0.7 0.473014
Target:  5'- gGCGGcgCcuUCGACGCGCgGGgcaaCGGCCa -3'
miRNA:   3'- -CGUCaaGc-AGCUGCGCGgCUa---GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 15543 0.66 0.691643
Target:  5'- gGCGgcGUUCGaaGACG-GCaCGAUCGACg -3'
miRNA:   3'- -CGU--CAAGCagCUGCgCG-GCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 15612 0.66 0.691643
Target:  5'- -gAGgcCGUCGAuCGUGCCGucuUCGaacGCCg -3'
miRNA:   3'- cgUCaaGCAGCU-GCGCGGCu--AGC---UGG- -5'
27675 3' -54.1 NC_005882.1 + 15732 0.66 0.691643
Target:  5'- gGCGGcgUCGcCGugGCGCUugccGUCGuCCu -3'
miRNA:   3'- -CGUCa-AGCaGCugCGCGGc---UAGCuGG- -5'
27675 3' -54.1 NC_005882.1 + 16226 0.68 0.624824
Target:  5'- ----gUCGUCGGCaaGCCGGcCGACUg -3'
miRNA:   3'- cgucaAGCAGCUGcgCGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 16277 0.7 0.493753
Target:  5'- cCGGcUUGcCGACGaCGUCGAUCGGCa -3'
miRNA:   3'- cGUCaAGCaGCUGC-GCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 16458 0.67 0.669486
Target:  5'- aCGGUUCGcCGA--UGCUGGUCGGCa -3'
miRNA:   3'- cGUCAAGCaGCUgcGCGGCUAGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.