miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 351 0.66 0.702639
Target:  5'- cGCAGc-CGUCGAUGUaauGCCGcagaAUCGGuCCg -3'
miRNA:   3'- -CGUCaaGCAGCUGCG---CGGC----UAGCU-GG- -5'
27675 3' -54.1 NC_005882.1 + 621 0.69 0.547272
Target:  5'- aGCuGGUUCGccuggUCG--GCGCCGAugUCGGCCa -3'
miRNA:   3'- -CG-UCAAGC-----AGCugCGCGGCU--AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 865 0.7 0.452722
Target:  5'- cGCA---CGUCGACGCGCuCGAaUGGCUc -3'
miRNA:   3'- -CGUcaaGCAGCUGCGCG-GCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 1600 0.77 0.193022
Target:  5'- uGCGauGggCGUCGACccguGCGgCGAUCGACCa -3'
miRNA:   3'- -CGU--CaaGCAGCUG----CGCgGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 2059 0.67 0.658347
Target:  5'- cGCGGaUCGgugauguccaaUCGGCGCaGCgCGAgcacgCGGCCg -3'
miRNA:   3'- -CGUCaAGC-----------AGCUGCG-CG-GCUa----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 3282 0.69 0.536403
Target:  5'- cGCGaagUCGUcCGACGUGCUGcgCGAgCg -3'
miRNA:   3'- -CGUca-AGCA-GCUGCGCGGCuaGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 3541 0.7 0.504278
Target:  5'- cGCGGgcC-UgGGCGUGCCGGUCGucACCg -3'
miRNA:   3'- -CGUCaaGcAgCUGCGCGGCUAGC--UGG- -5'
27675 3' -54.1 NC_005882.1 + 3611 0.77 0.182749
Target:  5'- cGCAGcgCGUCGACGcCGCUugcGUCGAUCa -3'
miRNA:   3'- -CGUCaaGCAGCUGC-GCGGc--UAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 3666 0.74 0.272678
Target:  5'- aGCGG--CGUCGACGCGCUGcgcacUCGGCUc -3'
miRNA:   3'- -CGUCaaGCAGCUGCGCGGCu----AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 3698 0.67 0.647184
Target:  5'- cGCGGgcCGUCGAgcgGgGCCaGcUCGACCa -3'
miRNA:   3'- -CGUCaaGCAGCUg--CgCGG-CuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 3711 0.72 0.376669
Target:  5'- -aAGUUCGgccgucUCGACaaGCCGGUCGGCg -3'
miRNA:   3'- cgUCAAGC------AGCUGcgCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 4522 0.68 0.580262
Target:  5'- cGCAGgucgaggUCGUCGA-G-GCUGcgCGGCCa -3'
miRNA:   3'- -CGUCa------AGCAGCUgCgCGGCuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 4794 0.67 0.647184
Target:  5'- aGCAGcUCGacgCGAuCGuCGCCGAgcuuacCGGCCc -3'
miRNA:   3'- -CGUCaAGCa--GCU-GC-GCGGCUa-----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 5026 0.67 0.680588
Target:  5'- gGCAGga-GUCGACGUaccugucacgaGCUGcUCGAUCu -3'
miRNA:   3'- -CGUCaagCAGCUGCG-----------CGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 6636 0.71 0.432915
Target:  5'- -aAGUcgUCGUgCGGCGCGCCGugcgucUCGGCg -3'
miRNA:   3'- cgUCA--AGCA-GCUGCGCGGCu-----AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 8055 0.66 0.691643
Target:  5'- cGCGGcaaCGUCGA-GCGCCauguacagcccGAacUCGACCu -3'
miRNA:   3'- -CGUCaa-GCAGCUgCGCGG-----------CU--AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 8274 0.72 0.373099
Target:  5'- uGCGGUgccgauuUCGUcacucgcuggguggCGGCaaGCGCCGGUCGGCUg -3'
miRNA:   3'- -CGUCA-------AGCA--------------GCUG--CGCGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 8756 0.68 0.591359
Target:  5'- gGCAGUUgG-CGACgagcaGCGCCGAaaCGACg -3'
miRNA:   3'- -CGUCAAgCaGCUG-----CGCGGCUa-GCUGg -5'
27675 3' -54.1 NC_005882.1 + 9390 0.67 0.647184
Target:  5'- cCAGUacaUCGUCGGgGCGauaCGAUCGuCg -3'
miRNA:   3'- cGUCA---AGCAGCUgCGCg--GCUAGCuGg -5'
27675 3' -54.1 NC_005882.1 + 9489 0.68 0.591359
Target:  5'- cGCug--CGaUUGGCGCGCUGG-CGGCCg -3'
miRNA:   3'- -CGucaaGC-AGCUGCGCGGCUaGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.