miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 23665 1.15 0.000397
Target:  5'- aGCAGUUCGUCGACGCGCCGAUCGACCa -3'
miRNA:   3'- -CGUCAAGCAGCUGCGCGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23425 0.79 0.145951
Target:  5'- aGCAGcUCGUCGGCgucacggGCGUCGAgCGGCCg -3'
miRNA:   3'- -CGUCaAGCAGCUG-------CGCGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23174 0.78 0.174883
Target:  5'- cCAGcUCGgggcgaucgcguacaUCGAUGCGCCGAUCGGCa -3'
miRNA:   3'- cGUCaAGC---------------AGCUGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 29935 0.77 0.182749
Target:  5'- aGCAGcUCGaUCGACGCaCCGG-CGGCCa -3'
miRNA:   3'- -CGUCaAGC-AGCUGCGcGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 3611 0.77 0.182749
Target:  5'- cGCAGcgCGUCGACGcCGCUugcGUCGAUCa -3'
miRNA:   3'- -CGUCaaGCAGCUGC-GCGGc--UAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 21480 0.77 0.187824
Target:  5'- gGCGGaggaaaUCGUCGACGCGCacuuGcgCGGCCg -3'
miRNA:   3'- -CGUCa-----AGCAGCUGCGCGg---CuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23521 0.77 0.193022
Target:  5'- uGCGGaUCGUCGAUcauCGCCGAcagCGGCCg -3'
miRNA:   3'- -CGUCaAGCAGCUGc--GCGGCUa--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 1600 0.77 0.193022
Target:  5'- uGCGauGggCGUCGACccguGCGgCGAUCGACCa -3'
miRNA:   3'- -CGU--CaaGCAGCUG----CGCgGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12827 0.75 0.258891
Target:  5'- uCAGUUCGUCGgauucgagcGCGUGCCGGgcuucUCGGCg -3'
miRNA:   3'- cGUCAAGCAGC---------UGCGCGGCU-----AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 25065 0.75 0.265712
Target:  5'- uGCuuuGUcgCGUCGACGCGCCGcUUGAUUu -3'
miRNA:   3'- -CGu--CAa-GCAGCUGCGCGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25468 0.75 0.265712
Target:  5'- cGCAGcUCGUCGGCGacgcgGCCGA--GGCCa -3'
miRNA:   3'- -CGUCaAGCAGCUGCg----CGGCUagCUGG- -5'
27675 3' -54.1 NC_005882.1 + 16823 0.75 0.265712
Target:  5'- -------uUCGACgGCGCCGAUCGACCc -3'
miRNA:   3'- cgucaagcAGCUG-CGCGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17207 0.74 0.272678
Target:  5'- aGCAGcUCGUCGGCacucGCGCCGuUCGcaauCCg -3'
miRNA:   3'- -CGUCaAGCAGCUG----CGCGGCuAGCu---GG- -5'
27675 3' -54.1 NC_005882.1 + 3666 0.74 0.272678
Target:  5'- aGCGG--CGUCGACGCGCUGcgcacUCGGCUc -3'
miRNA:   3'- -CGUCaaGCAGCUGCGCGGCu----AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 22628 0.74 0.287049
Target:  5'- uGCAGUcgcuguccgaCGUCGACGCGgCGcaguUCGGCCc -3'
miRNA:   3'- -CGUCAa---------GCAGCUGCGCgGCu---AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12718 0.73 0.309711
Target:  5'- cGCAGcgCGcggCGGCGCucGCCGG-CGACCu -3'
miRNA:   3'- -CGUCaaGCa--GCUGCG--CGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19482 0.73 0.333712
Target:  5'- cGC-GUUCGgCGaAUGCGCUGGUCGGCg -3'
miRNA:   3'- -CGuCAAGCaGC-UGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 31991 0.73 0.342009
Target:  5'- -----aCGUCGACGUccgaucgccgacGCCGGUCGACUa -3'
miRNA:   3'- cgucaaGCAGCUGCG------------CGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 32463 0.72 0.359047
Target:  5'- gGCAGUgcggaugCGUCGACGCcaUCGAUCagguaGACCa -3'
miRNA:   3'- -CGUCAa------GCAGCUGCGc-GGCUAG-----CUGG- -5'
27675 3' -54.1 NC_005882.1 + 15060 0.72 0.359047
Target:  5'- cGCAuGgcUGUCGcGCGCGCUGAUCGAg- -3'
miRNA:   3'- -CGU-CaaGCAGC-UGCGCGGCUAGCUgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.