miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 27557 0.69 0.536403
Target:  5'- uCGGgcgcUCGUCGGCGguCGCCGcgcgcgCGGCCg -3'
miRNA:   3'- cGUCa---AGCAGCUGC--GCGGCua----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 6636 0.71 0.432915
Target:  5'- -aAGUcgUCGUgCGGCGCGCCGugcgucUCGGCg -3'
miRNA:   3'- cgUCA--AGCA-GCUGCGCGGCu-----AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 26706 0.71 0.442756
Target:  5'- cGCAGUUCG-CGGC-CGCCcAUccCGGCCu -3'
miRNA:   3'- -CGUCAAGCaGCUGcGCGGcUA--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 30958 0.71 0.442756
Target:  5'- ----aUC-UCGACaUGCCGAUCGACCg -3'
miRNA:   3'- cgucaAGcAGCUGcGCGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19854 0.7 0.45172
Target:  5'- gGCgAGaaCGUCGauccgaaGCGCGCCGAgcuggaCGGCCg -3'
miRNA:   3'- -CG-UCaaGCAGC-------UGCGCGGCUa-----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 36676 0.7 0.473014
Target:  5'- --cGcgCGUCGACGUGCUGAaauaUCGcGCCg -3'
miRNA:   3'- cguCaaGCAGCUGCGCGGCU----AGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 15412 0.7 0.473014
Target:  5'- gGCGGcgCcuUCGACGCGCgGGgcaaCGGCCa -3'
miRNA:   3'- -CGUCaaGc-AGCUGCGCGgCUa---GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25005 0.7 0.48333
Target:  5'- aGCGGcgCGUCGACGCGacaaagcaaucCUGAUgucaggCGGCCc -3'
miRNA:   3'- -CGUCaaGCAGCUGCGC-----------GGCUA------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 14300 0.7 0.493753
Target:  5'- uGCAGgaugacgacCGUCGAaaccCGUGCgGAUCGugCg -3'
miRNA:   3'- -CGUCaa-------GCAGCU----GCGCGgCUAGCugG- -5'
27675 3' -54.1 NC_005882.1 + 30543 0.71 0.413621
Target:  5'- -aGGUgacgGUCGACGUGCCGGa-GACCg -3'
miRNA:   3'- cgUCAag--CAGCUGCGCGGCUagCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12324 0.72 0.385697
Target:  5'- uCAGcgCGUgacggcugcCGGCgGCGCCGAUCGGCa -3'
miRNA:   3'- cGUCaaGCA---------GCUG-CGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 15060 0.72 0.359047
Target:  5'- cGCAuGgcUGUCGcGCGCGCUGAUCGAg- -3'
miRNA:   3'- -CGU-CaaGCAGC-UGCGCGGCUAGCUgg -5'
27675 3' -54.1 NC_005882.1 + 23425 0.79 0.145951
Target:  5'- aGCAGcUCGUCGGCgucacggGCGUCGAgCGGCCg -3'
miRNA:   3'- -CGUCaAGCAGCUG-------CGCGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23174 0.78 0.174883
Target:  5'- cCAGcUCGgggcgaucgcguacaUCGAUGCGCCGAUCGGCa -3'
miRNA:   3'- cGUCaAGC---------------AGCUGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 3611 0.77 0.182749
Target:  5'- cGCAGcgCGUCGACGcCGCUugcGUCGAUCa -3'
miRNA:   3'- -CGUCaaGCAGCUGC-GCGGc--UAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 21480 0.77 0.187824
Target:  5'- gGCGGaggaaaUCGUCGACGCGCacuuGcgCGGCCg -3'
miRNA:   3'- -CGUCa-----AGCAGCUGCGCGg---CuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 16823 0.75 0.265712
Target:  5'- -------uUCGACgGCGCCGAUCGACCc -3'
miRNA:   3'- cgucaagcAGCUG-CGCGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 22628 0.74 0.287049
Target:  5'- uGCAGUcgcuguccgaCGUCGACGCGgCGcaguUCGGCCc -3'
miRNA:   3'- -CGUCAa---------GCAGCUGCGCgGCu---AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12718 0.73 0.309711
Target:  5'- cGCAGcgCGcggCGGCGCucGCCGG-CGACCu -3'
miRNA:   3'- -CGUCaaGCa--GCUGCG--CGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31991 0.73 0.342009
Target:  5'- -----aCGUCGACGUccgaucgccgacGCCGGUCGACUa -3'
miRNA:   3'- cgucaaGCAGCUGCG------------CGGCUAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.