miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 7342 0.69 0.752293
Target:  5'- gUCGACCAuuGCGGGCAugcCCGGaacaucgGCGUCg -3'
miRNA:   3'- -AGCUGGU--CGUUUGUuu-GGCUg------UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 8091 0.66 0.885744
Target:  5'- aCGAuCCAGCAAGCAAuggaaggGCuugcauggcaucgCGGCaACGUCg -3'
miRNA:   3'- aGCU-GGUCGUUUGUU-------UG-------------GCUG-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 8119 0.69 0.729932
Target:  5'- cUCGGCCAauGCAGACGAAaCGAuCGCGa- -3'
miRNA:   3'- -AGCUGGU--CGUUUGUUUgGCU-GUGCag -5'
27688 5' -49.8 NC_005882.1 + 8191 0.71 0.608909
Target:  5'- cCGACCGGCGcuugccgccacccAGCGAgugacgaaaucggcACCGcACGCGUCc -3'
miRNA:   3'- aGCUGGUCGU-------------UUGUU--------------UGGC-UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 9500 0.67 0.82544
Target:  5'- gCGcGCUGGCGGccGCAAGCaCGACGCGcCa -3'
miRNA:   3'- aGC-UGGUCGUU--UGUUUG-GCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 9797 0.69 0.729932
Target:  5'- gCGACCAGCAAcGCucccgauuGAGCCGGCcCGg- -3'
miRNA:   3'- aGCUGGUCGUU-UG--------UUUGGCUGuGCag -5'
27688 5' -49.8 NC_005882.1 + 10396 0.68 0.784753
Target:  5'- aCGACgcaAGCAcuGACGAGCCGGC-CGg- -3'
miRNA:   3'- aGCUGg--UCGU--UUGUUUGGCUGuGCag -5'
27688 5' -49.8 NC_005882.1 + 10709 0.71 0.648872
Target:  5'- cUCGAuCCGGUAucACAAccGCCGGCGCG-Cg -3'
miRNA:   3'- -AGCU-GGUCGUu-UGUU--UGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 10923 0.69 0.718576
Target:  5'- aCGACCAgguugaucGCGGACAGcACCGuCACGa- -3'
miRNA:   3'- aGCUGGU--------CGUUUGUU-UGGCuGUGCag -5'
27688 5' -49.8 NC_005882.1 + 11154 0.68 0.815586
Target:  5'- cCGACCuuuGCGAGCuGAUCGucCGCGUa -3'
miRNA:   3'- aGCUGGu--CGUUUGuUUGGCu-GUGCAg -5'
27688 5' -49.8 NC_005882.1 + 11402 0.67 0.853565
Target:  5'- gUCGAuccaaCCAGCGAGCAAcgCGAUugcauCGUCg -3'
miRNA:   3'- -AGCU-----GGUCGUUUGUUugGCUGu----GCAG- -5'
27688 5' -49.8 NC_005882.1 + 11746 0.68 0.784753
Target:  5'- cCGACUGGCGgcauggaccgGACGGACUGACGCc-- -3'
miRNA:   3'- aGCUGGUCGU----------UUGUUUGGCUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 12320 0.68 0.784753
Target:  5'- gCGAUCAGCGcguGACGGcuGCCGGCgGCGcCg -3'
miRNA:   3'- aGCUGGUCGU---UUGUU--UGGCUG-UGCaG- -5'
27688 5' -49.8 NC_005882.1 + 12341 0.68 0.79523
Target:  5'- -aGGCC-GCcguuAUAGGCCGACAgCGUCa -3'
miRNA:   3'- agCUGGuCGuu--UGUUUGGCUGU-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 12367 0.7 0.660609
Target:  5'- uUCGGCCAuGuCGAGCGguucaacgccGGCCGGCACG-Cg -3'
miRNA:   3'- -AGCUGGU-C-GUUUGU----------UUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 12393 0.66 0.887323
Target:  5'- cCGAUCGGCGcc---GCCGGCAgcCGUCa -3'
miRNA:   3'- aGCUGGUCGUuuguuUGGCUGU--GCAG- -5'
27688 5' -49.8 NC_005882.1 + 12435 0.7 0.68398
Target:  5'- cCGGCCGGCGuugaaccgcucGACAuGGCCGAaccaGCGUUg -3'
miRNA:   3'- aGCUGGUCGU-----------UUGU-UUGGCUg---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 12546 0.7 0.70367
Target:  5'- gCGGCCGGCGcugcGGCGAucggcgcacuggcgGCUGGCGCGgUCg -3'
miRNA:   3'- aGCUGGUCGU----UUGUU--------------UGGCUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 12668 0.71 0.625358
Target:  5'- gUCG-CCGGCAAGCGcACCGGCGUGa- -3'
miRNA:   3'- -AGCuGGUCGUUUGUuUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 12782 0.68 0.784753
Target:  5'- gUCG-CCGGCGAGCGccGCCGcGCgcuGCGUCu -3'
miRNA:   3'- -AGCuGGUCGUUUGUu-UGGC-UG---UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.