miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 675 0.69 0.752293
Target:  5'- cCGACCAgGCGAACcAGCUcgGGCGCGa- -3'
miRNA:   3'- aGCUGGU-CGUUUGuUUGG--CUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 942 0.69 0.741175
Target:  5'- cUGGCUugAGCuGGCGGAUCGGgGCGUCg -3'
miRNA:   3'- aGCUGG--UCGuUUGUUUGGCUgUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 1281 0.68 0.784753
Target:  5'- cCG-CCGGUAGAUGGAUCGagcggccuGCGCGUCg -3'
miRNA:   3'- aGCuGGUCGUUUGUUUGGC--------UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 1898 0.66 0.902449
Target:  5'- gCGGCCAGCGAAaguGCuCGAugucgcgguuaCGCGUUg -3'
miRNA:   3'- aGCUGGUCGUUUguuUG-GCU-----------GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 2215 0.66 0.879312
Target:  5'- gCGGCCuGCAAGCGuucAUCGaACGCGa- -3'
miRNA:   3'- aGCUGGuCGUUUGUu--UGGC-UGUGCag -5'
27688 5' -49.8 NC_005882.1 + 2826 0.68 0.812586
Target:  5'- uUCGACCuGGCGgcgcgaagcaauacGACGuAGCUGGCGCGaUCg -3'
miRNA:   3'- -AGCUGG-UCGU--------------UUGU-UUGGCUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 2993 0.66 0.879312
Target:  5'- -aGACCGGCAccgaccuGCGAGCCGcgaACAaCGUa -3'
miRNA:   3'- agCUGGUCGUu------UGUUUGGC---UGU-GCAg -5'
27688 5' -49.8 NC_005882.1 + 3236 0.66 0.887323
Target:  5'- aCGACUucGCGAgguACGGGCCGAUcuggauCGUCg -3'
miRNA:   3'- aGCUGGu-CGUU---UGUUUGGCUGu-----GCAG- -5'
27688 5' -49.8 NC_005882.1 + 3300 0.67 0.835062
Target:  5'- uUCGGCCAGCAcGCGguagcccaGGCCG-CGCa-- -3'
miRNA:   3'- -AGCUGGUCGUuUGU--------UUGGCuGUGcag -5'
27688 5' -49.8 NC_005882.1 + 3316 0.67 0.844441
Target:  5'- gCGGCCGGCcGACGauccaGAUCGGCcCGUa -3'
miRNA:   3'- aGCUGGUCGuUUGU-----UUGGCUGuGCAg -5'
27688 5' -49.8 NC_005882.1 + 3470 0.66 0.895038
Target:  5'- aCG-UCGGCGGugAcGACCGGCACGcCc -3'
miRNA:   3'- aGCuGGUCGUUugU-UUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 3633 0.68 0.79523
Target:  5'- aUGACCAGCAcGCGAcgcgaucguGCCGAaACGg- -3'
miRNA:   3'- aGCUGGUCGUuUGUU---------UGGCUgUGCag -5'
27688 5' -49.8 NC_005882.1 + 4722 0.69 0.729932
Target:  5'- -gGGCCGGUAAGCucGgCGACgaucGCGUCg -3'
miRNA:   3'- agCUGGUCGUUUGuuUgGCUG----UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 4862 0.68 0.815586
Target:  5'- cUCGAUCAGCGA---GAgCGGCGCGa- -3'
miRNA:   3'- -AGCUGGUCGUUuguUUgGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 5097 0.66 0.876851
Target:  5'- aUCGAgCAGCucguGACAGguacgucgacuccuGCCGACGCu-- -3'
miRNA:   3'- -AGCUgGUCGu---UUGUU--------------UGGCUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 5157 0.69 0.718576
Target:  5'- gUGAUCGGCGAaagcuaccggcgGCAcGCCGAUACGcCa -3'
miRNA:   3'- aGCUGGUCGUU------------UGUuUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 5241 0.67 0.82544
Target:  5'- cUGACUGGCGagGACGGGCgCGAgACGUa -3'
miRNA:   3'- aGCUGGUCGU--UUGUUUG-GCUgUGCAg -5'
27688 5' -49.8 NC_005882.1 + 5261 0.67 0.844441
Target:  5'- cCGACCAugacGCccGGCAccgaCGACACGUCg -3'
miRNA:   3'- aGCUGGU----CGu-UUGUuug-GCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 5869 0.78 0.289562
Target:  5'- cCGACCAcGCGAGCGAcuggauuuacACCGAgUACGUCa -3'
miRNA:   3'- aGCUGGU-CGUUUGUU----------UGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 6920 0.68 0.784753
Target:  5'- uUCGGgaAGCAcgugAACAAGCCGccgcgcaaACGCGUCu -3'
miRNA:   3'- -AGCUggUCGU----UUGUUUGGC--------UGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.