miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 28143 1.12 0.001444
Target:  5'- gUCGACCAGCAAACAAACCGACACGUCg -3'
miRNA:   3'- -AGCUGGUCGUUUGUUUGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 19037 0.8 0.207219
Target:  5'- gUCGGCCGGCAAccuGCAGGCCGAacccaccCAgGUCg -3'
miRNA:   3'- -AGCUGGUCGUU---UGUUUGGCU-------GUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 5869 0.78 0.289562
Target:  5'- cCGACCAcGCGAGCGAcuggauuuacACCGAgUACGUCa -3'
miRNA:   3'- aGCUGGU-CGUUUGUU----------UGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 16220 0.78 0.289562
Target:  5'- aUCGACgucguCGGCAAGCcGGCCGACugGUUc -3'
miRNA:   3'- -AGCUG-----GUCGUUUGuUUGGCUGugCAG- -5'
27688 5' -49.8 NC_005882.1 + 16282 0.77 0.330436
Target:  5'- gUCGGCCGGCuu----GCCGACgACGUCg -3'
miRNA:   3'- -AGCUGGUCGuuuguuUGGCUG-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 14354 0.76 0.339104
Target:  5'- cCGuAUCAGCAGAaauggugcGCCGACACGUCg -3'
miRNA:   3'- aGC-UGGUCGUUUguu-----UGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 16443 0.76 0.375405
Target:  5'- gUCGGCCAG-AAGCAcAUCGACAgGUCc -3'
miRNA:   3'- -AGCUGGUCgUUUGUuUGGCUGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 16515 0.75 0.414243
Target:  5'- cCGACCAGCAucGGCGAACCG-UACuUCu -3'
miRNA:   3'- aGCUGGUCGU--UUGUUUGGCuGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 23753 0.74 0.431481
Target:  5'- cUCGACgAGCGAGuCGaucagcccuuggucGAUCGGCGCGUCg -3'
miRNA:   3'- -AGCUGgUCGUUU-GU--------------UUGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 27200 0.74 0.434567
Target:  5'- cCGGCCAGCAu-CAGGCCGuuCACGa- -3'
miRNA:   3'- aGCUGGUCGUuuGUUUGGCu-GUGCag -5'
27688 5' -49.8 NC_005882.1 + 27134 0.74 0.434567
Target:  5'- gCGAgCAGCcgcAGCGGGCCGAUaaACGUCa -3'
miRNA:   3'- aGCUgGUCGu--UUGUUUGGCUG--UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 22724 0.74 0.443899
Target:  5'- aUCGugaaGCCGGCGAgcuGCGGGCCGAacugcgcCGCGUCg -3'
miRNA:   3'- -AGC----UGGUCGUU---UGUUUGGCU-------GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 16893 0.74 0.444943
Target:  5'- gCGACCaaaAGCugacGCAAGCCGGCGCG-Cg -3'
miRNA:   3'- aGCUGG---UCGuu--UGUUUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 17958 0.74 0.455457
Target:  5'- gUUGACCAGCuuGAGCGucguGCCGAgGCGgUCg -3'
miRNA:   3'- -AGCUGGUCG--UUUGUu---UGGCUgUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 15336 0.74 0.466103
Target:  5'- uUCGAUCAGCGGcACGugGACCGuCAgGUCg -3'
miRNA:   3'- -AGCUGGUCGUU-UGU--UUGGCuGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 22246 0.74 0.466103
Target:  5'- aUCGugaaauACCAGUAcAGCGGACCGACcagcgGCGUCa -3'
miRNA:   3'- -AGC------UGGUCGU-UUGUUUGGCUG-----UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 17278 0.73 0.521127
Target:  5'- -aGAUCGcGCGGGCAAGCCGuuccugcaGCGCGUCc -3'
miRNA:   3'- agCUGGU-CGUUUGUUUGGC--------UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 32347 0.73 0.521127
Target:  5'- gUUGGCCgAGCGccucGACAAcAUCGACAUGUCg -3'
miRNA:   3'- -AGCUGG-UCGU----UUGUU-UGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21425 0.73 0.521127
Target:  5'- gCGcACCGGCGccGACGAcgaucaauACCGACAuCGUCg -3'
miRNA:   3'- aGC-UGGUCGU--UUGUU--------UGGCUGU-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 15267 0.73 0.521127
Target:  5'- gUCGACCGGgAgcgccgugagcAGCGGGCCGA-GCGUCg -3'
miRNA:   3'- -AGCUGGUCgU-----------UUGUUUGGCUgUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.