Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27688 | 5' | -49.8 | NC_005882.1 | + | 21282 | 0.7 | 0.672316 |
Target: 5'- cUCGAUgCGGCGAcgGC-GGCCGGCgACGUCa -3' miRNA: 3'- -AGCUG-GUCGUU--UGuUUGGCUG-UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 19422 | 0.72 | 0.590166 |
Target: 5'- cCGACCAGCGcAUucGCCGaACGCGg- -3' miRNA: 3'- aGCUGGUCGUuUGuuUGGC-UGUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 33681 | 0.71 | 0.601871 |
Target: 5'- uUCGugCAGCGAGCAGucgguaauuACCGAUcCGcCa -3' miRNA: 3'- -AGCugGUCGUUUGUU---------UGGCUGuGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 8191 | 0.71 | 0.608909 |
Target: 5'- cCGACCGGCGcuugccgccacccAGCGAgugacgaaaucggcACCGcACGCGUCc -3' miRNA: 3'- aGCUGGUCGU-------------UUGUU--------------UGGC-UGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 20444 | 0.71 | 0.625358 |
Target: 5'- gCGGCCGGC-AGCGAuCCGGuCgGCGUCa -3' miRNA: 3'- aGCUGGUCGuUUGUUuGGCU-G-UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 13948 | 0.71 | 0.648872 |
Target: 5'- gCGAUCaaGGCGAGCAcggaAGCCGACGCaUCc -3' miRNA: 3'- aGCUGG--UCGUUUGU----UUGGCUGUGcAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 10709 | 0.71 | 0.648872 |
Target: 5'- cUCGAuCCGGUAucACAAccGCCGGCGCG-Cg -3' miRNA: 3'- -AGCU-GGUCGUu-UGUU--UGGCUGUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 35070 | 0.71 | 0.648872 |
Target: 5'- aUCGGCCGGC--ACGAAUgGGCA-GUCg -3' miRNA: 3'- -AGCUGGUCGuuUGUUUGgCUGUgCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 12367 | 0.7 | 0.660609 |
Target: 5'- uUCGGCCAuGuCGAGCGguucaacgccGGCCGGCACG-Cg -3' miRNA: 3'- -AGCUGGU-C-GUUUGU----------UUGGCUGUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 18872 | 0.72 | 0.578502 |
Target: 5'- -gGGCaGGCAcGCAGACCGACAUGa- -3' miRNA: 3'- agCUGgUCGUuUGUUUGGCUGUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 13255 | 0.72 | 0.566887 |
Target: 5'- aUCaGCCGGCAGGCGGACaacaCGGCGCGcCu -3' miRNA: 3'- -AGcUGGUCGUUUGUUUG----GCUGUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 30476 | 0.72 | 0.566887 |
Target: 5'- aCGugCucgGGCAuGCAGACCGugAuCGUCg -3' miRNA: 3'- aGCugG---UCGUuUGUUUGGCugU-GCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 19037 | 0.8 | 0.207219 |
Target: 5'- gUCGGCCGGCAAccuGCAGGCCGAacccaccCAgGUCg -3' miRNA: 3'- -AGCUGGUCGUU---UGUUUGGCU-------GUgCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16220 | 0.78 | 0.289562 |
Target: 5'- aUCGACgucguCGGCAAGCcGGCCGACugGUUc -3' miRNA: 3'- -AGCUG-----GUCGUUUGuUUGGCUGugCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 14354 | 0.76 | 0.339104 |
Target: 5'- cCGuAUCAGCAGAaauggugcGCCGACACGUCg -3' miRNA: 3'- aGC-UGGUCGUUUguu-----UGGCUGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16893 | 0.74 | 0.444943 |
Target: 5'- gCGACCaaaAGCugacGCAAGCCGGCGCG-Cg -3' miRNA: 3'- aGCUGG---UCGuu--UGUUUGGCUGUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 22246 | 0.74 | 0.466103 |
Target: 5'- aUCGugaaauACCAGUAcAGCGGACCGACcagcgGCGUCa -3' miRNA: 3'- -AGC------UGGUCGU-UUGUUUGGCUG-----UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 21425 | 0.73 | 0.521127 |
Target: 5'- gCGcACCGGCGccGACGAcgaucaauACCGACAuCGUCg -3' miRNA: 3'- aGC-UGGUCGU--UUGUU--------UGGCUGU-GCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 32347 | 0.73 | 0.521127 |
Target: 5'- gUUGGCCgAGCGccucGACAAcAUCGACAUGUCg -3' miRNA: 3'- -AGCUGG-UCGU----UUGUU-UGGCUGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 19811 | 0.72 | 0.566887 |
Target: 5'- gCGcGCCGGCGugacGACGAcgggcGCCGACACcGUCg -3' miRNA: 3'- aGC-UGGUCGU----UUGUU-----UGGCUGUG-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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