miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27692 5' -47.8 NC_005882.1 + 29000 1.1 0.00295
Target:  5'- uGUACGAGCAGAAGAACAUCACCAACGa -3'
miRNA:   3'- -CAUGCUCGUCUUCUUGUAGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 26034 0.71 0.762748
Target:  5'- gGUuCGAGCuGAAGGAUAUgGCCAAgGc -3'
miRNA:   3'- -CAuGCUCGuCUUCUUGUAgUGGUUgC- -5'
27692 5' -47.8 NC_005882.1 + 23622 0.7 0.773783
Target:  5'- cGUACGGGCG-----ACGUCAUCAACGa -3'
miRNA:   3'- -CAUGCUCGUcuucuUGUAGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 31985 0.7 0.784644
Target:  5'- cGUACGAGCuGGAGAAUcgcuUCGCUAGg- -3'
miRNA:   3'- -CAUGCUCGuCUUCUUGu---AGUGGUUgc -5'
27692 5' -47.8 NC_005882.1 + 29025 0.7 0.816045
Target:  5'- -aACGGGCucAGGGACGUCggcaACCGACGu -3'
miRNA:   3'- caUGCUCGucUUCUUGUAG----UGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 27135 0.69 0.825079
Target:  5'- -gGCGAGCAGccGcagcgggccgauaAACGUCAUCAGCa -3'
miRNA:   3'- caUGCUCGUCuuC-------------UUGUAGUGGUUGc -5'
27692 5' -47.8 NC_005882.1 + 27854 0.69 0.826071
Target:  5'- -cGCGAGCAGGucgucGAGCAugcgcuccaggUCGCgCAACGa -3'
miRNA:   3'- caUGCUCGUCUu----CUUGU-----------AGUG-GUUGC- -5'
27692 5' -47.8 NC_005882.1 + 29386 0.69 0.845388
Target:  5'- -cGCGAGCcgc-GAuCGUCGCCAGCGu -3'
miRNA:   3'- caUGCUCGucuuCUuGUAGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 12806 0.68 0.872348
Target:  5'- cGUGcCGGGCuucucGgcGAACAggUCGCCGGCGa -3'
miRNA:   3'- -CAU-GCUCGu----CuuCUUGU--AGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 6978 0.68 0.880757
Target:  5'- -gGCGAGCuGAAGcucgacGAUAUCGCCAccAUGa -3'
miRNA:   3'- caUGCUCGuCUUC------UUGUAGUGGU--UGC- -5'
27692 5' -47.8 NC_005882.1 + 621 0.68 0.888863
Target:  5'- ---gGGGCGGAcAGAACAUCuacuuuCCGAUGg -3'
miRNA:   3'- caugCUCGUCU-UCUUGUAGu-----GGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 6037 0.68 0.89666
Target:  5'- gGUGCGAGCAGuuggucGGGAugGaCGCCAuacauGCGu -3'
miRNA:   3'- -CAUGCUCGUC------UUCUugUaGUGGU-----UGC- -5'
27692 5' -47.8 NC_005882.1 + 28292 0.67 0.9113
Target:  5'- uGUACGgccGGCGGcuuGAACGgguuuuucuugUCGCCGACGa -3'
miRNA:   3'- -CAUGC---UCGUCuu-CUUGU-----------AGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 15280 0.67 0.918136
Target:  5'- uGUACGAGCGGGcgucgaccgGGAGCgccGUgAgCAGCGg -3'
miRNA:   3'- -CAUGCUCGUCU---------UCUUG---UAgUgGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 11183 0.67 0.918136
Target:  5'- ---aGAGCuGGGAGAACAUCcgcugccagaaGCCGACc -3'
miRNA:   3'- caugCUCG-UCUUCUUGUAG-----------UGGUUGc -5'
27692 5' -47.8 NC_005882.1 + 11313 0.67 0.918136
Target:  5'- -gGCGAcCAGGAGAACu---CCGACGa -3'
miRNA:   3'- caUGCUcGUCUUCUUGuaguGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 34654 0.67 0.924645
Target:  5'- -cGCGGGCGGGAuGGAUAcugguacugCACCGGCa -3'
miRNA:   3'- caUGCUCGUCUU-CUUGUa--------GUGGUUGc -5'
27692 5' -47.8 NC_005882.1 + 5639 0.67 0.924645
Target:  5'- -aGCGAGCGGcacAGGuugcGCGUCAUgGACGc -3'
miRNA:   3'- caUGCUCGUCu--UCU----UGUAGUGgUUGC- -5'
27692 5' -47.8 NC_005882.1 + 21471 0.67 0.924645
Target:  5'- gGUGCGccaGGCGGAGGAA-AUCGUCGACGc -3'
miRNA:   3'- -CAUGC---UCGUCUUCUUgUAGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 10788 0.67 0.930826
Target:  5'- -gGCGAuC-GAAGAACGcgCGCCGGCGg -3'
miRNA:   3'- caUGCUcGuCUUCUUGUa-GUGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.