Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27692 | 5' | -47.8 | NC_005882.1 | + | 29000 | 1.1 | 0.00295 |
Target: 5'- uGUACGAGCAGAAGAACAUCACCAACGa -3' miRNA: 3'- -CAUGCUCGUCUUCUUGUAGUGGUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 33688 | 0.66 | 0.95687 |
Target: 5'- -aGCGAGCAGucGGuaAUUACCGAUc -3' miRNA: 3'- caUGCUCGUCuuCUugUAGUGGUUGc -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 15036 | 0.66 | 0.95687 |
Target: 5'- cUGCGuGCcGAAGAACAgCGgCGGCGc -3' miRNA: 3'- cAUGCuCGuCUUCUUGUaGUgGUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 5454 | 0.66 | 0.956427 |
Target: 5'- uGUGCGuuucaguGGCGuuGAAGuGCAUaCGCCAGCGu -3' miRNA: 3'- -CAUGC-------UCGU--CUUCuUGUA-GUGGUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 25391 | 0.66 | 0.952299 |
Target: 5'- -cACGAcGCuGAAuGGccucggccGCGUCGCCGACGa -3' miRNA: 3'- caUGCU-CGuCUU-CU--------UGUAGUGGUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 3698 | 0.66 | 0.952299 |
Target: 5'- -cGCGGGCcGucGAGCGggGCCAGCu -3' miRNA: 3'- caUGCUCGuCuuCUUGUagUGGUUGc -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 13916 | 0.66 | 0.942209 |
Target: 5'- gGUACGGGCAGcguaucGAGCGccgcuUCGCC-GCGa -3' miRNA: 3'- -CAUGCUCGUCuu----CUUGU-----AGUGGuUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 9320 | 0.66 | 0.942209 |
Target: 5'- aGUACGAGaaAGgcGAGCGuUCGCCGgACGc -3' miRNA: 3'- -CAUGCUCg-UCuuCUUGU-AGUGGU-UGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 21471 | 0.67 | 0.924645 |
Target: 5'- gGUGCGccaGGCGGAGGAA-AUCGUCGACGc -3' miRNA: 3'- -CAUGC---UCGUCUUCUUgUAGUGGUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 26034 | 0.71 | 0.762748 |
Target: 5'- gGUuCGAGCuGAAGGAUAUgGCCAAgGc -3' miRNA: 3'- -CAuGCUCGuCUUCUUGUAgUGGUUgC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 23622 | 0.7 | 0.773783 |
Target: 5'- cGUACGGGCG-----ACGUCAUCAACGa -3' miRNA: 3'- -CAUGCUCGUcuucuUGUAGUGGUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 6037 | 0.68 | 0.89666 |
Target: 5'- gGUGCGAGCAGuuggucGGGAugGaCGCCAuacauGCGu -3' miRNA: 3'- -CAUGCUCGUC------UUCUugUaGUGGU-----UGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 11313 | 0.67 | 0.918136 |
Target: 5'- -gGCGAcCAGGAGAACu---CCGACGa -3' miRNA: 3'- caUGCUcGUCUUCUUGuaguGGUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 34654 | 0.67 | 0.924645 |
Target: 5'- -cGCGGGCGGGAuGGAUAcugguacugCACCGGCa -3' miRNA: 3'- caUGCUCGUCUU-CUUGUa--------GUGGUUGc -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 5639 | 0.67 | 0.924645 |
Target: 5'- -aGCGAGCGGcacAGGuugcGCGUCAUgGACGc -3' miRNA: 3'- caUGCUCGUCu--UCU----UGUAGUGgUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 3260 | 0.66 | 0.95687 |
Target: 5'- -cGCGAGCGuGcGGGcgGCGUCAcuguCCAGCGg -3' miRNA: 3'- caUGCUCGU-CuUCU--UGUAGU----GGUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 29025 | 0.7 | 0.816045 |
Target: 5'- -aACGGGCucAGGGACGUCggcaACCGACGu -3' miRNA: 3'- caUGCUCGucUUCUUGUAG----UGGUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 27135 | 0.69 | 0.825079 |
Target: 5'- -gGCGAGCAGccGcagcgggccgauaAACGUCAUCAGCa -3' miRNA: 3'- caUGCUCGUCuuC-------------UUGUAGUGGUUGc -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 27854 | 0.69 | 0.826071 |
Target: 5'- -cGCGAGCAGGucgucGAGCAugcgcuccaggUCGCgCAACGa -3' miRNA: 3'- caUGCUCGUCUu----CUUGU-----------AGUG-GUUGC- -5' |
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27692 | 5' | -47.8 | NC_005882.1 | + | 29386 | 0.69 | 0.845388 |
Target: 5'- -cGCGAGCcgc-GAuCGUCGCCAGCGu -3' miRNA: 3'- caUGCUCGucuuCUuGUAGUGGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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