miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27693 5' -60.7 NC_005882.1 + 29361 1.03 0.000398
Target:  5'- gAACCACCUGACGCUCACCGGCCGCAUu -3'
miRNA:   3'- -UUGGUGGACUGCGAGUGGCCGGCGUA- -5'
27693 5' -60.7 NC_005882.1 + 28327 0.77 0.044128
Target:  5'- aGACCGCCUG-CGCggcCGCCGGCgGCAc -3'
miRNA:   3'- -UUGGUGGACuGCGa--GUGGCCGgCGUa -5'
27693 5' -60.7 NC_005882.1 + 27144 0.77 0.046822
Target:  5'- gAACgGCCUGAUGCUgGCCGGgCGCGc -3'
miRNA:   3'- -UUGgUGGACUGCGAgUGGCCgGCGUa -5'
27693 5' -60.7 NC_005882.1 + 28122 0.73 0.084203
Target:  5'- cAUCGCCUGuuuuGCGCUCACCG-CCGCGc -3'
miRNA:   3'- uUGGUGGAC----UGCGAGUGGCcGGCGUa -5'
27693 5' -60.7 NC_005882.1 + 25041 0.73 0.089227
Target:  5'- aGGCgGCCcGGCGCccgaGCCGGCCGCAa -3'
miRNA:   3'- -UUGgUGGaCUGCGag--UGGCCGGCGUa -5'
27693 5' -60.7 NC_005882.1 + 16894 0.71 0.118896
Target:  5'- cGACCAaaagCUGACGCaaGCCGGCgCGCGUu -3'
miRNA:   3'- -UUGGUg---GACUGCGagUGGCCG-GCGUA- -5'
27693 5' -60.7 NC_005882.1 + 25121 0.71 0.122324
Target:  5'- aGGCCAUCgUGugGCUUugCGGCCGg-- -3'
miRNA:   3'- -UUGGUGG-ACugCGAGugGCCGGCgua -5'
27693 5' -60.7 NC_005882.1 + 22386 0.71 0.125844
Target:  5'- gGGCUACCUGAa----GCCGGCCGCAg -3'
miRNA:   3'- -UUGGUGGACUgcgagUGGCCGGCGUa -5'
27693 5' -60.7 NC_005882.1 + 1883 0.71 0.129457
Target:  5'- uACCGCgaGACGCUCG-CGGCCaGCGa -3'
miRNA:   3'- uUGGUGgaCUGCGAGUgGCCGG-CGUa -5'
27693 5' -60.7 NC_005882.1 + 25573 0.7 0.140879
Target:  5'- -cCCGgCUGGCGCgcggCGCCGcGCUGCGUg -3'
miRNA:   3'- uuGGUgGACUGCGa---GUGGC-CGGCGUA- -5'
27693 5' -60.7 NC_005882.1 + 17956 0.7 0.14652
Target:  5'- uGACCAgCUugagcgucgugccgaGGCGgUCGCCGGCCGCc- -3'
miRNA:   3'- -UUGGUgGA---------------CUGCgAGUGGCCGGCGua -5'
27693 5' -60.7 NC_005882.1 + 12588 0.7 0.149
Target:  5'- cGGCCGCCgc-CGCgacaCACUGGCCGCGc -3'
miRNA:   3'- -UUGGUGGacuGCGa---GUGGCCGGCGUa -5'
27693 5' -60.7 NC_005882.1 + 20504 0.7 0.16198
Target:  5'- cGCCgACCgGAuCGCU-GCCGGCCGCGg -3'
miRNA:   3'- uUGG-UGGaCU-GCGAgUGGCCGGCGUa -5'
27693 5' -60.7 NC_005882.1 + 27587 0.69 0.171191
Target:  5'- cGGCCGCCggcauggcGACGCagGCCgcGGCCGCGg -3'
miRNA:   3'- -UUGGUGGa-------CUGCGagUGG--CCGGCGUa -5'
27693 5' -60.7 NC_005882.1 + 9577 0.69 0.191024
Target:  5'- aGACCugcuCCUGGCGCgucgugcUugCGGCCGCc- -3'
miRNA:   3'- -UUGGu---GGACUGCGa------GugGCCGGCGua -5'
27693 5' -60.7 NC_005882.1 + 14805 0.68 0.196288
Target:  5'- cGCgGCCuUGAgCGCUCGCCGaGCUGCu- -3'
miRNA:   3'- uUGgUGG-ACU-GCGAGUGGC-CGGCGua -5'
27693 5' -60.7 NC_005882.1 + 12292 0.68 0.201679
Target:  5'- cGGCCGCCgUGauGCGCUCccagagguGCCGGUCGUAc -3'
miRNA:   3'- -UUGGUGG-AC--UGCGAG--------UGGCCGGCGUa -5'
27693 5' -60.7 NC_005882.1 + 32016 0.68 0.201679
Target:  5'- cGGCCGCC-GACGCUCGUCGGUcagguuguCGCGUa -3'
miRNA:   3'- -UUGGUGGaCUGCGAGUGGCCG--------GCGUA- -5'
27693 5' -60.7 NC_005882.1 + 1321 0.68 0.207197
Target:  5'- -uCCGCagGAUGCguuuaaCGCCGGCCGCAUc -3'
miRNA:   3'- uuGGUGgaCUGCGa-----GUGGCCGGCGUA- -5'
27693 5' -60.7 NC_005882.1 + 15726 0.68 0.212846
Target:  5'- -gUCGCCgUGGCGCUUgccgucguccugGCCGGUCGCGc -3'
miRNA:   3'- uuGGUGG-ACUGCGAG------------UGGCCGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.