Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27693 | 5' | -60.7 | NC_005882.1 | + | 29361 | 1.03 | 0.000398 |
Target: 5'- gAACCACCUGACGCUCACCGGCCGCAUu -3' miRNA: 3'- -UUGGUGGACUGCGAGUGGCCGGCGUA- -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 25444 | 0.66 | 0.306463 |
Target: 5'- -cCCGCCUggggGACGCgauggCGCgGGCCGUu- -3' miRNA: 3'- uuGGUGGA----CUGCGa----GUGgCCGGCGua -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 21354 | 0.66 | 0.291362 |
Target: 5'- cGCCgACCUGAaGCUgGCCGuGCCGgAa -3' miRNA: 3'- uUGG-UGGACUgCGAgUGGC-CGGCgUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 31453 | 0.68 | 0.224541 |
Target: 5'- gAACCugCUGAuUGCa-GCCGGCaCGCGUg -3' miRNA: 3'- -UUGGugGACU-GCGagUGGCCG-GCGUA- -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 9485 | 0.68 | 0.224541 |
Target: 5'- aAGCCGCUgcgauUGGCGCgcuGgCGGCCGCAa -3' miRNA: 3'- -UUGGUGG-----ACUGCGag-UgGCCGGCGUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 31519 | 0.68 | 0.218627 |
Target: 5'- cACCgACgUGACGCUCgucGCCGGCCa--- -3' miRNA: 3'- uUGG-UGgACUGCGAG---UGGCCGGcgua -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 27587 | 0.69 | 0.171191 |
Target: 5'- cGGCCGCCggcauggcGACGCagGCCgcGGCCGCGg -3' miRNA: 3'- -UUGGUGGa-------CUGCGagUGG--CCGGCGUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 25573 | 0.7 | 0.140879 |
Target: 5'- -cCCGgCUGGCGCgcggCGCCGcGCUGCGUg -3' miRNA: 3'- uuGGUgGACUGCGa---GUGGC-CGGCGUA- -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 1883 | 0.71 | 0.129457 |
Target: 5'- uACCGCgaGACGCUCG-CGGCCaGCGa -3' miRNA: 3'- uUGGUGgaCUGCGAGUgGCCGG-CGUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 22386 | 0.71 | 0.125844 |
Target: 5'- gGGCUACCUGAa----GCCGGCCGCAg -3' miRNA: 3'- -UUGGUGGACUgcgagUGGCCGGCGUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 16894 | 0.71 | 0.118896 |
Target: 5'- cGACCAaaagCUGACGCaaGCCGGCgCGCGUu -3' miRNA: 3'- -UUGGUg---GACUGCGagUGGCCG-GCGUA- -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 25041 | 0.73 | 0.089227 |
Target: 5'- aGGCgGCCcGGCGCccgaGCCGGCCGCAa -3' miRNA: 3'- -UUGgUGGaCUGCGag--UGGCCGGCGUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 27144 | 0.77 | 0.046822 |
Target: 5'- gAACgGCCUGAUGCUgGCCGGgCGCGc -3' miRNA: 3'- -UUGgUGGACUGCGAgUGGCCgGCGUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 9577 | 0.69 | 0.191024 |
Target: 5'- aGACCugcuCCUGGCGCgucgugcUugCGGCCGCc- -3' miRNA: 3'- -UUGGu---GGACUGCGa------GugGCCGGCGua -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 20504 | 0.7 | 0.16198 |
Target: 5'- cGCCgACCgGAuCGCU-GCCGGCCGCGg -3' miRNA: 3'- uUGG-UGGaCU-GCGAgUGGCCGGCGUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 12588 | 0.7 | 0.149 |
Target: 5'- cGGCCGCCgc-CGCgacaCACUGGCCGCGc -3' miRNA: 3'- -UUGGUGGacuGCGa---GUGGCCGGCGUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 17956 | 0.7 | 0.14652 |
Target: 5'- uGACCAgCUugagcgucgugccgaGGCGgUCGCCGGCCGCc- -3' miRNA: 3'- -UUGGUgGA---------------CUGCgAGUGGCCGGCGua -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 25121 | 0.71 | 0.122324 |
Target: 5'- aGGCCAUCgUGugGCUUugCGGCCGg-- -3' miRNA: 3'- -UUGGUGG-ACugCGAGugGCCGGCgua -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 28122 | 0.73 | 0.084203 |
Target: 5'- cAUCGCCUGuuuuGCGCUCACCG-CCGCGc -3' miRNA: 3'- uUGGUGGAC----UGCGAGUGGCcGGCGUa -5' |
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27693 | 5' | -60.7 | NC_005882.1 | + | 18406 | 0.66 | 0.269813 |
Target: 5'- aGACCgGCCUugcGACGCg-ACgCGGCCGCGg -3' miRNA: 3'- -UUGG-UGGA---CUGCGagUG-GCCGGCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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