miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 3' -53.9 NC_005882.1 + 15734 0.67 0.604891
Target:  5'- aCGGCGGCgucGCCGuggcgcuuGCCGucGUCcuGGCc -3'
miRNA:   3'- -GCCGCCGa--UGGUu-------UGGCuuCAGc-UCG- -5'
27695 3' -53.9 NC_005882.1 + 17123 0.68 0.559885
Target:  5'- gCGGacaaGGUguUCAGugCGgcGUCGAGCg -3'
miRNA:   3'- -GCCg---CCGauGGUUugGCuuCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 17351 0.77 0.160799
Target:  5'- uCGGCGGCaGCUucaugcaguAGCCGAGGUCGAccGCu -3'
miRNA:   3'- -GCCGCCGaUGGu--------UUGGCUUCAGCU--CG- -5'
27695 3' -53.9 NC_005882.1 + 17646 0.7 0.462924
Target:  5'- aGGCgccacgGGCUGCCGAGCUGAaccuGGUUGAcuucGCc -3'
miRNA:   3'- gCCG------CCGAUGGUUUGGCU----UCAGCU----CG- -5'
27695 3' -53.9 NC_005882.1 + 17808 0.66 0.672926
Target:  5'- aCGGCuggGGCUGCCGGuGCCGcguGGUgGcGCu -3'
miRNA:   3'- -GCCG---CCGAUGGUU-UGGCu--UCAgCuCG- -5'
27695 3' -53.9 NC_005882.1 + 18089 0.72 0.366504
Target:  5'- aGGUcaGGCUGCCAcgccgcggcACCGggGUUGuAGCu -3'
miRNA:   3'- gCCG--CCGAUGGUu--------UGGCuuCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 18502 0.68 0.5981
Target:  5'- gCGGCGuauuccuuguuGCUGCCGAugacgGCCGAAuugucgucgugauccGUCGAGa -3'
miRNA:   3'- -GCCGC-----------CGAUGGUU-----UGGCUU---------------CAGCUCg -5'
27695 3' -53.9 NC_005882.1 + 18548 0.71 0.403398
Target:  5'- uGGCGaGCUGCa--ACCuGAagcGGUCGAGCc -3'
miRNA:   3'- gCCGC-CGAUGguuUGG-CU---UCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 19038 0.66 0.717609
Target:  5'- uCGGcCGGCaACCugcAGGCCGAacccacccaGGUCGAucccGCa -3'
miRNA:   3'- -GCC-GCCGaUGG---UUUGGCU---------UCAGCU----CG- -5'
27695 3' -53.9 NC_005882.1 + 19251 0.7 0.462924
Target:  5'- cCGGCGGCUGCgc-ACCGAGGaaccCGAcGUg -3'
miRNA:   3'- -GCCGCCGAUGguuUGGCUUCa---GCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 19576 0.69 0.537716
Target:  5'- aGGCGGCggacgACC--GCCGccacAG-CGAGCa -3'
miRNA:   3'- gCCGCCGa----UGGuuUGGCu---UCaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 19711 0.66 0.672926
Target:  5'- uCGGCgaaGGCgaUGCCAAgcaGCCGcuGgCGAGCg -3'
miRNA:   3'- -GCCG---CCG--AUGGUU---UGGCuuCaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 19762 0.73 0.315666
Target:  5'- uCGGCGaGCUGCCGAAggucgUCGAAuuuggCGAGCa -3'
miRNA:   3'- -GCCGC-CGAUGGUUU-----GGCUUca---GCUCG- -5'
27695 3' -53.9 NC_005882.1 + 20358 0.67 0.615095
Target:  5'- aCGGCGGCUuguuCCAGggggaacGCCGAuuccuGGUCuucGCg -3'
miRNA:   3'- -GCCGCCGAu---GGUU-------UGGCU-----UCAGcu-CG- -5'
27695 3' -53.9 NC_005882.1 + 21115 0.68 0.55877
Target:  5'- uCGGC-GUUGCCGAaacgaccGCCGAuGUCG-GCg -3'
miRNA:   3'- -GCCGcCGAUGGUU-------UGGCUuCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 21187 0.76 0.206621
Target:  5'- uGGcCGGCgcACCGGucgacgagcauGCCGAGGUCGAGUc -3'
miRNA:   3'- gCC-GCCGa-UGGUU-----------UGGCUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 21231 0.66 0.706542
Target:  5'- gCGGcCGGCcaaGCCAuuCCGAAGgcaacCGGcGCa -3'
miRNA:   3'- -GCC-GCCGa--UGGUuuGGCUUCa----GCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 21763 0.66 0.706542
Target:  5'- cCGGCucgGGCgucGCCGGGCCGcucGGGUCGccgaucgucAGCu -3'
miRNA:   3'- -GCCG---CCGa--UGGUUUGGC---UUCAGC---------UCG- -5'
27695 3' -53.9 NC_005882.1 + 22715 0.66 0.666148
Target:  5'- cCGGCGaGCUG-CGGGCCGAAcugcgccgcgucgacGUCGgacAGCg -3'
miRNA:   3'- -GCCGC-CGAUgGUUUGGCUU---------------CAGC---UCG- -5'
27695 3' -53.9 NC_005882.1 + 23121 0.66 0.684189
Target:  5'- cCGGCGuaCUGCacgcaGAACuCGGucucGGUCGAGCu -3'
miRNA:   3'- -GCCGCc-GAUGg----UUUG-GCU----UCAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.