miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 3' -53.9 NC_005882.1 + 1120 0.68 0.556542
Target:  5'- aGGCGGaugagcuuUUGCCGAGCCuGAGGcccgcgaucagauuUCGAGUa -3'
miRNA:   3'- gCCGCC--------GAUGGUUUGG-CUUC--------------AGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 1922 0.67 0.627582
Target:  5'- -cGCGGUUACgCGuuGgCGAuGUCGAGCg -3'
miRNA:   3'- gcCGCCGAUG-GUu-UgGCUuCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 2467 0.7 0.431573
Target:  5'- uGGCGGaCgaaGCCAAAaCGAgaucgaaggggcuGGUCGAGCu -3'
miRNA:   3'- gCCGCC-Ga--UGGUUUgGCU-------------UCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 3364 0.67 0.616229
Target:  5'- gCGGCcugGGCUACCGcgugcuGGCCGAAGagaucUCGccGCg -3'
miRNA:   3'- -GCCG---CCGAUGGU------UUGGCUUC-----AGCu-CG- -5'
27695 3' -53.9 NC_005882.1 + 4898 0.68 0.571066
Target:  5'- aGGCGGCaaagcagAUCAAgGCCGcuGUCGaAGCu -3'
miRNA:   3'- gCCGCCGa------UGGUU-UGGCuuCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 5399 0.76 0.184999
Target:  5'- uGGCGGUUGCCucGCCGGaaAGUCGGa- -3'
miRNA:   3'- gCCGCCGAUGGuuUGGCU--UCAGCUcg -5'
27695 3' -53.9 NC_005882.1 + 5667 0.66 0.695398
Target:  5'- aCGcCGuGUUcGCCGAuCCGgcGUCGAGCa -3'
miRNA:   3'- -GCcGC-CGA-UGGUUuGGCuuCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 6663 0.66 0.684189
Target:  5'- uCGGCGuGCUgcGCCAAGguuUCGAAGgCG-GCa -3'
miRNA:   3'- -GCCGC-CGA--UGGUUU---GGCUUCaGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 7617 0.72 0.366504
Target:  5'- cCGGCcuGGagugcGCCGAGCaCGAAGUCGcAGCa -3'
miRNA:   3'- -GCCG--CCga---UGGUUUG-GCUUCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 8066 0.66 0.717609
Target:  5'- uCGuCuGCauugGCCGAGCCagcguaGAAGUCGAGCa -3'
miRNA:   3'- -GCcGcCGa---UGGUUUGG------CUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 10269 0.77 0.160345
Target:  5'- uCGGCGGCUGCCAguAugCGGggaaaacguacgcGGUCG-GCa -3'
miRNA:   3'- -GCCGCCGAUGGU--UugGCU-------------UCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 10769 0.73 0.299946
Target:  5'- cCGGCGGUUGugAuACCGGA-UCGAGCg -3'
miRNA:   3'- -GCCGCCGAUggUuUGGCUUcAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 11751 0.69 0.525651
Target:  5'- uGGCGGCauggACCGGAcggacugacgcCCGAAGccgacuaUCGAGUc -3'
miRNA:   3'- gCCGCCGa---UGGUUU-----------GGCUUC-------AGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 11967 0.66 0.695398
Target:  5'- aGGCgcuGGCUACCGcGCCGAGcuGaCGcGCa -3'
miRNA:   3'- gCCG---CCGAUGGUuUGGCUU--CaGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 12341 0.73 0.292315
Target:  5'- cCGGCGGC-GCCGAucggcaacGCUGGuucggccauGUCGAGCg -3'
miRNA:   3'- -GCCGCCGaUGGUU--------UGGCUu--------CAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 12598 0.73 0.299946
Target:  5'- uCGGCGGCUAUCAcGCCGGugcgcuugccGG-CGAcGCg -3'
miRNA:   3'- -GCCGCCGAUGGUuUGGCU----------UCaGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 13079 0.66 0.695398
Target:  5'- -cGCGGCUGCgGcGGCUGgcGUCGAcGUg -3'
miRNA:   3'- gcCGCCGAUGgU-UUGGCuuCAGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 13778 0.66 0.717609
Target:  5'- gCGGCGuGCaacGCCu-GCCGAAGgcCGuGCg -3'
miRNA:   3'- -GCCGC-CGa--UGGuuUGGCUUCa-GCuCG- -5'
27695 3' -53.9 NC_005882.1 + 13884 0.66 0.672926
Target:  5'- ---gGGCUACCAGAUCaGcAAGUCG-GCg -3'
miRNA:   3'- gccgCCGAUGGUUUGG-C-UUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 14748 0.67 0.609424
Target:  5'- uCGGCGaGCUGCuCAAggccgcgauggcgcuGCUGAuGUgGGGCg -3'
miRNA:   3'- -GCCGC-CGAUG-GUU---------------UGGCUuCAgCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.