miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 3' -53.9 NC_005882.1 + 29962 1.12 0.000562
Target:  5'- gCGGCGGCUACCAAACCGAAGUCGAGCu -3'
miRNA:   3'- -GCCGCCGAUGGUUUGGCUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 10269 0.77 0.160345
Target:  5'- uCGGCGGCUGCCAguAugCGGggaaaacguacgcGGUCG-GCa -3'
miRNA:   3'- -GCCGCCGAUGGU--UugGCU-------------UCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 17351 0.77 0.160799
Target:  5'- uCGGCGGCaGCUucaugcaguAGCCGAGGUCGAccGCu -3'
miRNA:   3'- -GCCGCCGaUGGu--------UUGGCUUCAGCU--CG- -5'
27695 3' -53.9 NC_005882.1 + 5399 0.76 0.184999
Target:  5'- uGGCGGUUGCCucGCCGGaaAGUCGGa- -3'
miRNA:   3'- gCCGCCGAUGGuuUGGCU--UCAGCUcg -5'
27695 3' -53.9 NC_005882.1 + 21187 0.76 0.206621
Target:  5'- uGGcCGGCgcACCGGucgacgagcauGCCGAGGUCGAGUc -3'
miRNA:   3'- gCC-GCCGa-UGGUU-----------UGGCUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 25734 0.76 0.212358
Target:  5'- uGGCGGcCUGCCGAacagcGCCGAuuaCGGGCg -3'
miRNA:   3'- gCCGCC-GAUGGUU-----UGGCUucaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 32977 0.74 0.256435
Target:  5'- uCGGCGGCcgcacgcgcUACCugAAGgCGcAGGUCGAGCa -3'
miRNA:   3'- -GCCGCCG---------AUGG--UUUgGC-UUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 12341 0.73 0.292315
Target:  5'- cCGGCGGC-GCCGAucggcaacGCUGGuucggccauGUCGAGCg -3'
miRNA:   3'- -GCCGCCGaUGGUU--------UGGCUu--------CAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 31022 0.73 0.292315
Target:  5'- cCGGUGGgaGCCGcGCugCGAGGUCGuGCg -3'
miRNA:   3'- -GCCGCCgaUGGUuUG--GCUUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 10769 0.73 0.299946
Target:  5'- cCGGCGGUUGugAuACCGGA-UCGAGCg -3'
miRNA:   3'- -GCCGCCGAUggUuUGGCUUcAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 12598 0.73 0.299946
Target:  5'- uCGGCGGCUAUCAcGCCGGugcgcuugccGG-CGAcGCg -3'
miRNA:   3'- -GCCGCCGAUGGUuUGGCU----------UCaGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 26016 0.73 0.315666
Target:  5'- aCGGCGGCaaGCUcgGCCGGu-UCGAGCu -3'
miRNA:   3'- -GCCGCCGa-UGGuuUGGCUucAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 19762 0.73 0.315666
Target:  5'- uCGGCGaGCUGCCGAAggucgUCGAAuuuggCGAGCa -3'
miRNA:   3'- -GCCGC-CGAUGGUUU-----GGCUUca---GCUCG- -5'
27695 3' -53.9 NC_005882.1 + 25647 0.73 0.323757
Target:  5'- aCGGCGGCUGCCAcGGCCGcgcccguaaUCG-GCg -3'
miRNA:   3'- -GCCGCCGAUGGU-UUGGCuuc------AGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 7617 0.72 0.366504
Target:  5'- cCGGCcuGGagugcGCCGAGCaCGAAGUCGcAGCa -3'
miRNA:   3'- -GCCG--CCga---UGGUUUG-GCUUCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 24127 0.72 0.366504
Target:  5'- cCGGCaGCUcgACCuuGCCGAucauGcCGAGCg -3'
miRNA:   3'- -GCCGcCGA--UGGuuUGGCUu---CaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 18089 0.72 0.366504
Target:  5'- aGGUcaGGCUGCCAcgccgcggcACCGggGUUGuAGCu -3'
miRNA:   3'- gCCG--CCGAUGGUu--------UGGCuuCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 25134 0.71 0.381897
Target:  5'- gCGGCGGCgaucaagGCCAucguguggcuuugcGGCCGGc-UCGGGCg -3'
miRNA:   3'- -GCCGCCGa------UGGU--------------UUGGCUucAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 18548 0.71 0.403398
Target:  5'- uGGCGaGCUGCa--ACCuGAagcGGUCGAGCc -3'
miRNA:   3'- gCCGC-CGAUGguuUGG-CU---UCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 2467 0.7 0.431573
Target:  5'- uGGCGGaCgaaGCCAAAaCGAgaucgaaggggcuGGUCGAGCu -3'
miRNA:   3'- gCCGCC-Ga--UGGUUUgGCU-------------UCAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.