miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 3' -53.9 NC_005882.1 + 31971 0.68 0.571066
Target:  5'- uCGGCGGCcGCU-GACCGAuuacGUCGAcGUc -3'
miRNA:   3'- -GCCGCCGaUGGuUUGGCUu---CAGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 30613 0.69 0.515857
Target:  5'- gGGCGGCaugGCCGGAUCGGgcGG-CGAugGCg -3'
miRNA:   3'- gCCGCCGa--UGGUUUGGCU--UCaGCU--CG- -5'
27695 3' -53.9 NC_005882.1 + 11751 0.69 0.525651
Target:  5'- uGGCGGCauggACCGGAcggacugacgcCCGAAGccgacuaUCGAGUc -3'
miRNA:   3'- gCCGCCGa---UGGUUU-----------GGCUUC-------AGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 19576 0.69 0.537716
Target:  5'- aGGCGGCggacgACC--GCCGccacAG-CGAGCa -3'
miRNA:   3'- gCCGCCGa----UGGuuUGGCu---UCaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 26286 0.69 0.537716
Target:  5'- cCGGCGGCUAUuCGAGCuaCGAAGgcUCGcuGCa -3'
miRNA:   3'- -GCCGCCGAUG-GUUUG--GCUUC--AGCu-CG- -5'
27695 3' -53.9 NC_005882.1 + 1120 0.68 0.556542
Target:  5'- aGGCGGaugagcuuUUGCCGAGCCuGAGGcccgcgaucagauuUCGAGUa -3'
miRNA:   3'- gCCGCC--------GAUGGUUUGG-CUUC--------------AGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 21115 0.68 0.55877
Target:  5'- uCGGC-GUUGCCGAaacgaccGCCGAuGUCG-GCg -3'
miRNA:   3'- -GCCGcCGAUGGUU-------UGGCUuCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 32569 0.68 0.559885
Target:  5'- uCGGCGcCUagGCUuuGgCGAAGUUGAGCu -3'
miRNA:   3'- -GCCGCcGA--UGGuuUgGCUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 24090 0.68 0.571066
Target:  5'- gGGCGGCcuggaCAAGCuCGAAGgCGAGa -3'
miRNA:   3'- gCCGCCGaug--GUUUG-GCUUCaGCUCg -5'
27695 3' -53.9 NC_005882.1 + 27726 0.7 0.442557
Target:  5'- gGGCGGCUcACCGGACgGcgucaaggaucAGGUCaAGCa -3'
miRNA:   3'- gCCGCCGA-UGGUUUGgC-----------UUCAGcUCG- -5'
27695 3' -53.9 NC_005882.1 + 18548 0.71 0.403398
Target:  5'- uGGCGaGCUGCa--ACCuGAagcGGUCGAGCc -3'
miRNA:   3'- gCCGC-CGAUGguuUGG-CU---UCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 25647 0.73 0.323757
Target:  5'- aCGGCGGCUGCCAcGGCCGcgcccguaaUCG-GCg -3'
miRNA:   3'- -GCCGCCGAUGGU-UUGGCuuc------AGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 10269 0.77 0.160345
Target:  5'- uCGGCGGCUGCCAguAugCGGggaaaacguacgcGGUCG-GCa -3'
miRNA:   3'- -GCCGCCGAUGGU--UugGCU-------------UCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 21187 0.76 0.206621
Target:  5'- uGGcCGGCgcACCGGucgacgagcauGCCGAGGUCGAGUc -3'
miRNA:   3'- gCC-GCCGa-UGGUU-----------UGGCUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 32977 0.74 0.256435
Target:  5'- uCGGCGGCcgcacgcgcUACCugAAGgCGcAGGUCGAGCa -3'
miRNA:   3'- -GCCGCCG---------AUGG--UUUgGC-UUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 12341 0.73 0.292315
Target:  5'- cCGGCGGC-GCCGAucggcaacGCUGGuucggccauGUCGAGCg -3'
miRNA:   3'- -GCCGCCGaUGGUU--------UGGCUu--------CAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 31022 0.73 0.292315
Target:  5'- cCGGUGGgaGCCGcGCugCGAGGUCGuGCg -3'
miRNA:   3'- -GCCGCCgaUGGUuUG--GCUUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 12598 0.73 0.299946
Target:  5'- uCGGCGGCUAUCAcGCCGGugcgcuugccGG-CGAcGCg -3'
miRNA:   3'- -GCCGCCGAUGGUuUGGCU----------UCaGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 19762 0.73 0.315666
Target:  5'- uCGGCGaGCUGCCGAAggucgUCGAAuuuggCGAGCa -3'
miRNA:   3'- -GCCGC-CGAUGGUUU-----GGCUUca---GCUCG- -5'
27695 3' -53.9 NC_005882.1 + 26016 0.73 0.315666
Target:  5'- aCGGCGGCaaGCUcgGCCGGu-UCGAGCu -3'
miRNA:   3'- -GCCGCCGa-UGGuuUGGCUucAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.