miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 5' -59.5 NC_005882.1 + 15015 0.67 0.365535
Target:  5'- -gGCUUcaccuucgGCCGUCCAGGCUucgcccuugcgcaGGCAAAu- -3'
miRNA:   3'- cgCGAG--------CGGCAGGUCCGG-------------CCGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 21248 0.66 0.375065
Target:  5'- aUGCUCGUCGaCCGGugcGCCGGCcaugaccAGGa -3'
miRNA:   3'- cGCGAGCGGCaGGUC---CGGCCGuu-----UCC- -5'
27695 5' -59.5 NC_005882.1 + 4918 0.66 0.375065
Target:  5'- cGCGCcgcucUCGCUGaUCgAGGC-GGCAAAGc -3'
miRNA:   3'- -CGCG-----AGCGGC-AGgUCCGgCCGUUUCc -5'
27695 5' -59.5 NC_005882.1 + 25258 0.66 0.392818
Target:  5'- cGUGCUCGCCGUCU-GGCUGuuCAucGa -3'
miRNA:   3'- -CGCGAGCGGCAGGuCCGGCc-GUuuCc -5'
27695 5' -59.5 NC_005882.1 + 12215 0.66 0.401896
Target:  5'- uGCGcCUCGCCcagCUcGGCCGGau-AGGc -3'
miRNA:   3'- -CGC-GAGCGGca-GGuCCGGCCguuUCC- -5'
27695 5' -59.5 NC_005882.1 + 26064 0.66 0.411107
Target:  5'- -aGCUUGCCG-CCguAGGCCGcGCGGu-- -3'
miRNA:   3'- cgCGAGCGGCaGG--UCCGGC-CGUUucc -5'
27695 5' -59.5 NC_005882.1 + 25168 0.67 0.333113
Target:  5'- cGgGC-CgGCCGUCguGGCCGGCu---- -3'
miRNA:   3'- -CgCGaG-CGGCAGguCCGGCCGuuucc -5'
27695 5' -59.5 NC_005882.1 + 33160 0.68 0.309642
Target:  5'- gGCGCUUgGCCGaCCAGuuCGGCAagccuugccgcGAGGu -3'
miRNA:   3'- -CGCGAG-CGGCaGGUCcgGCCGU-----------UUCC- -5'
27695 5' -59.5 NC_005882.1 + 32191 0.69 0.271988
Target:  5'- gGCGCgggacgauaucgCGCC--CCAGGCCGGCGGc-- -3'
miRNA:   3'- -CGCGa-----------GCGGcaGGUCCGGCCGUUucc -5'
27695 5' -59.5 NC_005882.1 + 15718 0.75 0.097972
Target:  5'- gGCGCUUGCCGucgUCCuGGCCGGUcgcgcGGa -3'
miRNA:   3'- -CGCGAGCGGC---AGGuCCGGCCGuuu--CC- -5'
27695 5' -59.5 NC_005882.1 + 28711 0.73 0.137003
Target:  5'- cGCuGCUCGCCGUCgAGaGCUGGCccgcGGc -3'
miRNA:   3'- -CG-CGAGCGGCAGgUC-CGGCCGuuu-CC- -5'
27695 5' -59.5 NC_005882.1 + 1684 0.72 0.152923
Target:  5'- aGCGUcgaaaGCCccgaaGUUCaAGGCCGGCAAGGGg -3'
miRNA:   3'- -CGCGag---CGG-----CAGG-UCCGGCCGUUUCC- -5'
27695 5' -59.5 NC_005882.1 + 25633 0.71 0.184852
Target:  5'- aGCGCggCGCCGcgcgccagCCGGGUC-GCAAGGGc -3'
miRNA:   3'- -CGCGa-GCGGCa-------GGUCCGGcCGUUUCC- -5'
27695 5' -59.5 NC_005882.1 + 8982 0.71 0.192933
Target:  5'- gGCGCacgaaaUCGCCGUCaagcuggggcucaAGGCUGGCGAAa- -3'
miRNA:   3'- -CGCG------AGCGGCAGg------------UCCGGCCGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 654 0.7 0.234428
Target:  5'- gGCGCgagaUUGCCGaCCGcauGGCCGGCcacuGGGg -3'
miRNA:   3'- -CGCG----AGCGGCaGGU---CCGGCCGuu--UCC- -5'
27695 5' -59.5 NC_005882.1 + 24695 0.69 0.249414
Target:  5'- uGCGCUUGCCGcgacgcaacgucaguUCCGugagcgucuGGCCGGUAGcgaguuugacGGGa -3'
miRNA:   3'- -CGCGAGCGGC---------------AGGU---------CCGGCCGUU----------UCC- -5'
27695 5' -59.5 NC_005882.1 + 2127 0.69 0.269249
Target:  5'- cGCGCUgCGCCGauuggacaucaccgaUCCGcGCUGGCuGGAGGc -3'
miRNA:   3'- -CGCGA-GCGGC---------------AGGUcCGGCCG-UUUCC- -5'
27695 5' -59.5 NC_005882.1 + 27867 0.66 0.414828
Target:  5'- gGCGCUCGCgcuucgcgagcagguCGucgagcaugcgcUCCAGGUCGcGCAAcgacAGGu -3'
miRNA:   3'- -CGCGAGCG---------------GC------------AGGUCCGGC-CGUU----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.