Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27695 | 5' | -59.5 | NC_005882.1 | + | 29999 | 1.11 | 0.000188 |
Target: 5'- gGCGCUCGCCGUCCAGGCCGGCAAAGGc -3' miRNA: 3'- -CGCGAGCGGCAGGUCCGGCCGUUUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 29753 | 0.66 | 0.401896 |
Target: 5'- uGCgGCUUuCCG-CaCGGGCCGGCuccAAGGc -3' miRNA: 3'- -CG-CGAGcGGCaG-GUCCGGCCGu--UUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 6936 | 0.66 | 0.401896 |
Target: 5'- -aGCUCGCCGguuuGGCCGGuCAGc-- -3' miRNA: 3'- cgCGAGCGGCagguCCGGCC-GUUucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 9335 | 0.66 | 0.392818 |
Target: 5'- aGCGUUCGCCGgacgCCAGcuaccuCgCGGCAAucaugcgugucGGGg -3' miRNA: 3'- -CGCGAGCGGCa---GGUCc-----G-GCCGUU-----------UCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 14335 | 0.66 | 0.383873 |
Target: 5'- uGCGCcCGCCGUCCugcuGCCGuaucaGCAGAa- -3' miRNA: 3'- -CGCGaGCGGCAGGuc--CGGC-----CGUUUcc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 13132 | 0.67 | 0.366394 |
Target: 5'- aUGCUCGCgacguucauCGgccuucugaUCgGGGCCGGCAAGGu -3' miRNA: 3'- cGCGAGCG---------GC---------AGgUCCGGCCGUUUCc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 4698 | 0.67 | 0.357863 |
Target: 5'- aGCGgUUGCUGUUgacccgcucgCGGGCCGGUAAGc- -3' miRNA: 3'- -CGCgAGCGGCAG----------GUCCGGCCGUUUcc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 21349 | 0.67 | 0.333113 |
Target: 5'- aCGCUCGCCGaCCugaagcuGGCCGuGCc--GGa -3' miRNA: 3'- cGCGAGCGGCaGGu------CCGGC-CGuuuCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 5671 | 0.68 | 0.317323 |
Target: 5'- cGUGUUCGCCGaUCCGGcGUCGaGCAu--- -3' miRNA: 3'- -CGCGAGCGGC-AGGUC-CGGC-CGUuucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 16710 | 0.68 | 0.302103 |
Target: 5'- cGCGCgCGuCCG-CgCAGGCCgGGCuuGAGGu -3' miRNA: 3'- -CGCGaGC-GGCaG-GUCCGG-CCGu-UUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 27018 | 0.68 | 0.287452 |
Target: 5'- cGCGCUCGUCGUU--GGCCGcGCGc--- -3' miRNA: 3'- -CGCGAGCGGCAGguCCGGC-CGUuucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 7558 | 0.78 | 0.055929 |
Target: 5'- cGUGCUCGgCGcacUCCAGGCCGGUgauuaccacgcgguuGAAGGa -3' miRNA: 3'- -CGCGAGCgGC---AGGUCCGGCCG---------------UUUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 23228 | 0.77 | 0.069613 |
Target: 5'- gGCGCUgGCCGggCgCGGGCCGGC--GGGc -3' miRNA: 3'- -CGCGAgCGGCa-G-GUCCGGCCGuuUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 14114 | 0.74 | 0.119249 |
Target: 5'- cGCGCU-GCUGUCCaAGGCC-GCGAAGa -3' miRNA: 3'- -CGCGAgCGGCAGG-UCCGGcCGUUUCc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 9713 | 0.72 | 0.152923 |
Target: 5'- uCGCUCGgUGaauaUCCGGGCCGGCucaaucGGGa -3' miRNA: 3'- cGCGAGCgGC----AGGUCCGGCCGuu----UCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 32295 | 0.69 | 0.240578 |
Target: 5'- uGCuCUUGCCG-CCAGcGCUGGCGAAa- -3' miRNA: 3'- -CGcGAGCGGCaGGUC-CGGCCGUUUcc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 7700 | 0.69 | 0.266533 |
Target: 5'- gGCGCUCGCgggcggCGUCgAGGCUa-CGGAGGa -3' miRNA: 3'- -CGCGAGCG------GCAGgUCCGGccGUUUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 11930 | 0.68 | 0.287452 |
Target: 5'- gGCGC-CGCCGcgCCcguGGCCGcGCAAGu- -3' miRNA: 3'- -CGCGaGCGGCa-GGu--CCGGC-CGUUUcc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 27867 | 0.66 | 0.414828 |
Target: 5'- gGCGCUCGCgcuucgcgagcagguCGucgagcaugcgcUCCAGGUCGcGCAAcgacAGGu -3' miRNA: 3'- -CGCGAGCG---------------GC------------AGGUCCGGC-CGUU----UCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 28711 | 0.73 | 0.137003 |
Target: 5'- cGCuGCUCGCCGUCgAGaGCUGGCccgcGGc -3' miRNA: 3'- -CG-CGAGCGGCAGgUC-CGGCCGuuu-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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