miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 5' -59.5 NC_005882.1 + 654 0.7 0.234428
Target:  5'- gGCGCgagaUUGCCGaCCGcauGGCCGGCcacuGGGg -3'
miRNA:   3'- -CGCG----AGCGGCaGGU---CCGGCCGuu--UCC- -5'
27695 5' -59.5 NC_005882.1 + 1684 0.72 0.152923
Target:  5'- aGCGUcgaaaGCCccgaaGUUCaAGGCCGGCAAGGGg -3'
miRNA:   3'- -CGCGag---CGG-----CAGG-UCCGGCCGUUUCC- -5'
27695 5' -59.5 NC_005882.1 + 2127 0.69 0.269249
Target:  5'- cGCGCUgCGCCGauuggacaucaccgaUCCGcGCUGGCuGGAGGc -3'
miRNA:   3'- -CGCGA-GCGGC---------------AGGUcCGGCCG-UUUCC- -5'
27695 5' -59.5 NC_005882.1 + 4698 0.67 0.357863
Target:  5'- aGCGgUUGCUGUUgacccgcucgCGGGCCGGUAAGc- -3'
miRNA:   3'- -CGCgAGCGGCAG----------GUCCGGCCGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 4918 0.66 0.375065
Target:  5'- cGCGCcgcucUCGCUGaUCgAGGC-GGCAAAGc -3'
miRNA:   3'- -CGCG-----AGCGGC-AGgUCCGgCCGUUUCc -5'
27695 5' -59.5 NC_005882.1 + 5671 0.68 0.317323
Target:  5'- cGUGUUCGCCGaUCCGGcGUCGaGCAu--- -3'
miRNA:   3'- -CGCGAGCGGC-AGGUC-CGGC-CGUuucc -5'
27695 5' -59.5 NC_005882.1 + 6936 0.66 0.401896
Target:  5'- -aGCUCGCCGguuuGGCCGGuCAGc-- -3'
miRNA:   3'- cgCGAGCGGCagguCCGGCC-GUUucc -5'
27695 5' -59.5 NC_005882.1 + 7558 0.78 0.055929
Target:  5'- cGUGCUCGgCGcacUCCAGGCCGGUgauuaccacgcgguuGAAGGa -3'
miRNA:   3'- -CGCGAGCgGC---AGGUCCGGCCG---------------UUUCC- -5'
27695 5' -59.5 NC_005882.1 + 7700 0.69 0.266533
Target:  5'- gGCGCUCGCgggcggCGUCgAGGCUa-CGGAGGa -3'
miRNA:   3'- -CGCGAGCG------GCAGgUCCGGccGUUUCC- -5'
27695 5' -59.5 NC_005882.1 + 8982 0.71 0.192933
Target:  5'- gGCGCacgaaaUCGCCGUCaagcuggggcucaAGGCUGGCGAAa- -3'
miRNA:   3'- -CGCG------AGCGGCAGg------------UCCGGCCGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 9335 0.66 0.392818
Target:  5'- aGCGUUCGCCGgacgCCAGcuaccuCgCGGCAAucaugcgugucGGGg -3'
miRNA:   3'- -CGCGAGCGGCa---GGUCc-----G-GCCGUU-----------UCC- -5'
27695 5' -59.5 NC_005882.1 + 9713 0.72 0.152923
Target:  5'- uCGCUCGgUGaauaUCCGGGCCGGCucaaucGGGa -3'
miRNA:   3'- cGCGAGCgGC----AGGUCCGGCCGuu----UCC- -5'
27695 5' -59.5 NC_005882.1 + 11930 0.68 0.287452
Target:  5'- gGCGC-CGCCGcgCCcguGGCCGcGCAAGu- -3'
miRNA:   3'- -CGCGaGCGGCa-GGu--CCGGC-CGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 12215 0.66 0.401896
Target:  5'- uGCGcCUCGCCcagCUcGGCCGGau-AGGc -3'
miRNA:   3'- -CGC-GAGCGGca-GGuCCGGCCguuUCC- -5'
27695 5' -59.5 NC_005882.1 + 13132 0.67 0.366394
Target:  5'- aUGCUCGCgacguucauCGgccuucugaUCgGGGCCGGCAAGGu -3'
miRNA:   3'- cGCGAGCG---------GC---------AGgUCCGGCCGUUUCc -5'
27695 5' -59.5 NC_005882.1 + 14114 0.74 0.119249
Target:  5'- cGCGCU-GCUGUCCaAGGCC-GCGAAGa -3'
miRNA:   3'- -CGCGAgCGGCAGG-UCCGGcCGUUUCc -5'
27695 5' -59.5 NC_005882.1 + 14335 0.66 0.383873
Target:  5'- uGCGCcCGCCGUCCugcuGCCGuaucaGCAGAa- -3'
miRNA:   3'- -CGCGaGCGGCAGGuc--CGGC-----CGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 15015 0.67 0.365535
Target:  5'- -gGCUUcaccuucgGCCGUCCAGGCUucgcccuugcgcaGGCAAAu- -3'
miRNA:   3'- cgCGAG--------CGGCAGGUCCGG-------------CCGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 15718 0.75 0.097972
Target:  5'- gGCGCUUGCCGucgUCCuGGCCGGUcgcgcGGa -3'
miRNA:   3'- -CGCGAGCGGC---AGGuCCGGCCGuuu--CC- -5'
27695 5' -59.5 NC_005882.1 + 16710 0.68 0.302103
Target:  5'- cGCGCgCGuCCG-CgCAGGCCgGGCuuGAGGu -3'
miRNA:   3'- -CGCGaGC-GGCaG-GUCCGG-CCGu-UUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.