miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 5' -59.5 NC_005882.1 + 29999 1.11 0.000188
Target:  5'- gGCGCUCGCCGUCCAGGCCGGCAAAGGc -3'
miRNA:   3'- -CGCGAGCGGCAGGUCCGGCCGUUUCC- -5'
27695 5' -59.5 NC_005882.1 + 7558 0.78 0.055929
Target:  5'- cGUGCUCGgCGcacUCCAGGCCGGUgauuaccacgcgguuGAAGGa -3'
miRNA:   3'- -CGCGAGCgGC---AGGUCCGGCCG---------------UUUCC- -5'
27695 5' -59.5 NC_005882.1 + 23228 0.77 0.069613
Target:  5'- gGCGCUgGCCGggCgCGGGCCGGC--GGGc -3'
miRNA:   3'- -CGCGAgCGGCa-G-GUCCGGCCGuuUCC- -5'
27695 5' -59.5 NC_005882.1 + 15718 0.75 0.097972
Target:  5'- gGCGCUUGCCGucgUCCuGGCCGGUcgcgcGGa -3'
miRNA:   3'- -CGCGAGCGGC---AGGuCCGGCCGuuu--CC- -5'
27695 5' -59.5 NC_005882.1 + 14114 0.74 0.119249
Target:  5'- cGCGCU-GCUGUCCaAGGCC-GCGAAGa -3'
miRNA:   3'- -CGCGAgCGGCAGG-UCCGGcCGUUUCc -5'
27695 5' -59.5 NC_005882.1 + 28711 0.73 0.137003
Target:  5'- cGCuGCUCGCCGUCgAGaGCUGGCccgcGGc -3'
miRNA:   3'- -CG-CGAGCGGCAGgUC-CGGCCGuuu-CC- -5'
27695 5' -59.5 NC_005882.1 + 1684 0.72 0.152923
Target:  5'- aGCGUcgaaaGCCccgaaGUUCaAGGCCGGCAAGGGg -3'
miRNA:   3'- -CGCGag---CGG-----CAGG-UCCGGCCGUUUCC- -5'
27695 5' -59.5 NC_005882.1 + 9713 0.72 0.152923
Target:  5'- uCGCUCGgUGaauaUCCGGGCCGGCucaaucGGGa -3'
miRNA:   3'- cGCGAGCgGC----AGGUCCGGCCGuu----UCC- -5'
27695 5' -59.5 NC_005882.1 + 25633 0.71 0.184852
Target:  5'- aGCGCggCGCCGcgcgccagCCGGGUC-GCAAGGGc -3'
miRNA:   3'- -CGCGa-GCGGCa-------GGUCCGGcCGUUUCC- -5'
27695 5' -59.5 NC_005882.1 + 8982 0.71 0.192933
Target:  5'- gGCGCacgaaaUCGCCGUCaagcuggggcucaAGGCUGGCGAAa- -3'
miRNA:   3'- -CGCG------AGCGGCAGg------------UCCGGCCGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 654 0.7 0.234428
Target:  5'- gGCGCgagaUUGCCGaCCGcauGGCCGGCcacuGGGg -3'
miRNA:   3'- -CGCG----AGCGGCaGGU---CCGGCCGuu--UCC- -5'
27695 5' -59.5 NC_005882.1 + 32295 0.69 0.240578
Target:  5'- uGCuCUUGCCG-CCAGcGCUGGCGAAa- -3'
miRNA:   3'- -CGcGAGCGGCaGGUC-CGGCCGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 24695 0.69 0.249414
Target:  5'- uGCGCUUGCCGcgacgcaacgucaguUCCGugagcgucuGGCCGGUAGcgaguuugacGGGa -3'
miRNA:   3'- -CGCGAGCGGC---------------AGGU---------CCGGCCGUU----------UCC- -5'
27695 5' -59.5 NC_005882.1 + 7700 0.69 0.266533
Target:  5'- gGCGCUCGCgggcggCGUCgAGGCUa-CGGAGGa -3'
miRNA:   3'- -CGCGAGCG------GCAGgUCCGGccGUUUCC- -5'
27695 5' -59.5 NC_005882.1 + 2127 0.69 0.269249
Target:  5'- cGCGCUgCGCCGauuggacaucaccgaUCCGcGCUGGCuGGAGGc -3'
miRNA:   3'- -CGCGA-GCGGC---------------AGGUcCGGCCG-UUUCC- -5'
27695 5' -59.5 NC_005882.1 + 32191 0.69 0.271988
Target:  5'- gGCGCgggacgauaucgCGCC--CCAGGCCGGCGGc-- -3'
miRNA:   3'- -CGCGa-----------GCGGcaGGUCCGGCCGUUucc -5'
27695 5' -59.5 NC_005882.1 + 11930 0.68 0.287452
Target:  5'- gGCGC-CGCCGcgCCcguGGCCGcGCAAGu- -3'
miRNA:   3'- -CGCGaGCGGCa-GGu--CCGGC-CGUUUcc -5'
27695 5' -59.5 NC_005882.1 + 27018 0.68 0.287452
Target:  5'- cGCGCUCGUCGUU--GGCCGcGCGc--- -3'
miRNA:   3'- -CGCGAGCGGCAGguCCGGC-CGUuucc -5'
27695 5' -59.5 NC_005882.1 + 16710 0.68 0.302103
Target:  5'- cGCGCgCGuCCG-CgCAGGCCgGGCuuGAGGu -3'
miRNA:   3'- -CGCGaGC-GGCaG-GUCCGG-CCGu-UUCC- -5'
27695 5' -59.5 NC_005882.1 + 33160 0.68 0.309642
Target:  5'- gGCGCUUgGCCGaCCAGuuCGGCAagccuugccgcGAGGu -3'
miRNA:   3'- -CGCGAG-CGGCaGGUCcgGCCGU-----------UUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.