miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27696 3' -55.2 NC_005882.1 + 30447 1.11 0.000507
Target:  5'- uCGAGUACGAUCGCGCGACCCACACGCu -3'
miRNA:   3'- -GCUCAUGCUAGCGCGCUGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 31000 0.77 0.149
Target:  5'- gCGAGU-CGGUCGaCGCGAUCCGCcggugggagccGCGCu -3'
miRNA:   3'- -GCUCAuGCUAGC-GCGCUGGGUG-----------UGCG- -5'
27696 3' -55.2 NC_005882.1 + 3604 0.75 0.191024
Target:  5'- cCGAGUGCGcagCGCGuCGACgCCGCuuGCg -3'
miRNA:   3'- -GCUCAUGCua-GCGC-GCUG-GGUGugCG- -5'
27696 3' -55.2 NC_005882.1 + 1682 0.75 0.196288
Target:  5'- --cGUcCGGUaCGgGCGGCCCGCGCGCc -3'
miRNA:   3'- gcuCAuGCUA-GCgCGCUGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 6426 0.72 0.306463
Target:  5'- -aGGUGCGAUCuacgaCGCGGCCUGC-CGCg -3'
miRNA:   3'- gcUCAUGCUAGc----GCGCUGGGUGuGCG- -5'
27696 3' -55.2 NC_005882.1 + 13702 0.71 0.346806
Target:  5'- cCGAGUacACGAUCGauuGCGAgCCGggcauCGCGCg -3'
miRNA:   3'- -GCUCA--UGCUAGCg--CGCUgGGU-----GUGCG- -5'
27696 3' -55.2 NC_005882.1 + 17934 0.71 0.37189
Target:  5'- gCGAGcUGCGcgagGUCGCGacguuccgcacguCGACCCAguCACGCg -3'
miRNA:   3'- -GCUC-AUGC----UAGCGC-------------GCUGGGU--GUGCG- -5'
27696 3' -55.2 NC_005882.1 + 19500 0.71 0.372777
Target:  5'- uGGGUACGGUUGC-CGcCCCGCguucggcgaauGCGCu -3'
miRNA:   3'- gCUCAUGCUAGCGcGCuGGGUG-----------UGCG- -5'
27696 3' -55.2 NC_005882.1 + 35956 0.71 0.372777
Target:  5'- uGAGUgugcgaGCGAUCGCGaauGCCgAUACGCc -3'
miRNA:   3'- gCUCA------UGCUAGCGCgc-UGGgUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 15587 0.7 0.39081
Target:  5'- cCGAcGUGC--UCGCG-GACCUGCGCGCc -3'
miRNA:   3'- -GCU-CAUGcuAGCGCgCUGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 8332 0.7 0.409404
Target:  5'- aGAGaUGCguucgacgcugaGAUUGCGCcGCUCGCGCGCa -3'
miRNA:   3'- gCUC-AUG------------CUAGCGCGcUGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 25768 0.7 0.409404
Target:  5'- gCGAG-ACGAUgcgcCGUGCGGCCCuugcCACGa -3'
miRNA:   3'- -GCUCaUGCUA----GCGCGCUGGGu---GUGCg -5'
27696 3' -55.2 NC_005882.1 + 10968 0.7 0.409404
Target:  5'- uGGcGUGCGAaaucCGCauGCG-CCCGCGCGCg -3'
miRNA:   3'- gCU-CAUGCUa---GCG--CGCuGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 22956 0.7 0.42757
Target:  5'- cCGGGUGCGAcgGCggccaagGCGACCUACgacuACGCg -3'
miRNA:   3'- -GCUCAUGCUagCG-------CGCUGGGUG----UGCG- -5'
27696 3' -55.2 NC_005882.1 + 18637 0.69 0.438303
Target:  5'- aCGAGc-CGAUCGCGC--UCUGCGCGCc -3'
miRNA:   3'- -GCUCauGCUAGCGCGcuGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 14324 0.69 0.458204
Target:  5'- --cGUGCgGAUCGUGCG-CCCGC-CGUc -3'
miRNA:   3'- gcuCAUG-CUAGCGCGCuGGGUGuGCG- -5'
27696 3' -55.2 NC_005882.1 + 7574 0.69 0.467316
Target:  5'- aGAGUACGcagagaaaucGUUGCGCGcucuccaggcgguGCCCGCcgaguccugGCGCg -3'
miRNA:   3'- gCUCAUGC----------UAGCGCGC-------------UGGGUG---------UGCG- -5'
27696 3' -55.2 NC_005882.1 + 25451 0.69 0.468334
Target:  5'- gGGGgacGCGAUgGCGCgGGCCguUGCGCa -3'
miRNA:   3'- gCUCa--UGCUAgCGCG-CUGGguGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 19384 0.69 0.468334
Target:  5'- uCGAGUcgauccGCGAagUCGCGCGACaagaCgAUGCGCc -3'
miRNA:   3'- -GCUCA------UGCU--AGCGCGCUGg---G-UGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 4689 0.69 0.468334
Target:  5'- aCGAGcugcaGCGGUUGCuGuUGACCCGCuCGCg -3'
miRNA:   3'- -GCUCa----UGCUAGCG-C-GCUGGGUGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.