miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27696 3' -55.2 NC_005882.1 + 1277 0.66 0.630541
Target:  5'- -cGGUAgaugGAUCGaGCGGCCUGCGCGUc -3'
miRNA:   3'- gcUCAUg---CUAGCgCGCUGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 1682 0.75 0.196288
Target:  5'- --cGUcCGGUaCGgGCGGCCCGCGCGCc -3'
miRNA:   3'- gcuCAuGCUA-GCgCGCUGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 2236 0.69 0.488931
Target:  5'- aCGAGUGCcuUCGCGauuggaCGACggaCGCACGCc -3'
miRNA:   3'- -GCUCAUGcuAGCGC------GCUGg--GUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 3311 0.67 0.60824
Target:  5'- ----cGCGGUagcccaggcCGCGCagcGCCCGCGCGCa -3'
miRNA:   3'- gcucaUGCUA---------GCGCGc--UGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 3414 0.66 0.653961
Target:  5'- gGAGUGCGucUCGCGUcucacguugcugaacGCUUGCGCGCg -3'
miRNA:   3'- gCUCAUGCu-AGCGCGc--------------UGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 3604 0.75 0.191024
Target:  5'- cCGAGUGCGcagCGCGuCGACgCCGCuuGCg -3'
miRNA:   3'- -GCUCAUGCua-GCGC-GCUG-GGUGugCG- -5'
27696 3' -55.2 NC_005882.1 + 4528 0.68 0.531322
Target:  5'- uCGAGgucguCGAggcUGCGCGG-CCAUACGCc -3'
miRNA:   3'- -GCUCau---GCUa--GCGCGCUgGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 4689 0.69 0.468334
Target:  5'- aCGAGcugcaGCGGUUGCuGuUGACCCGCuCGCg -3'
miRNA:   3'- -GCUCa----UGCUAGCG-C-GCUGGGUGuGCG- -5'
27696 3' -55.2 NC_005882.1 + 6143 0.66 0.641698
Target:  5'- cCGuuGUcCGAUaGCGCGAUUCaACGCGCg -3'
miRNA:   3'- -GCu-CAuGCUAgCGCGCUGGG-UGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 6426 0.72 0.306463
Target:  5'- -aGGUGCGAUCuacgaCGCGGCCUGC-CGCg -3'
miRNA:   3'- gcUCAUGCUAGc----GCGCUGGGUGuGCG- -5'
27696 3' -55.2 NC_005882.1 + 6541 0.66 0.652847
Target:  5'- gCGGG-ACG-UCGUcuccguccgcaGCGGCCUugACGCc -3'
miRNA:   3'- -GCUCaUGCuAGCG-----------CGCUGGGugUGCG- -5'
27696 3' -55.2 NC_005882.1 + 7574 0.69 0.467316
Target:  5'- aGAGUACGcagagaaaucGUUGCGCGcucuccaggcgguGCCCGCcgaguccugGCGCg -3'
miRNA:   3'- gCUCAUGC----------UAGCGCGC-------------UGGGUG---------UGCG- -5'
27696 3' -55.2 NC_005882.1 + 8105 0.68 0.542134
Target:  5'- aCGAa-ACGAUCGCGaCGAUCCAgCAaGCa -3'
miRNA:   3'- -GCUcaUGCUAGCGC-GCUGGGU-GUgCG- -5'
27696 3' -55.2 NC_005882.1 + 8215 0.66 0.663976
Target:  5'- gCGAGUgACGAaaUCG-GCa--CCGCACGCg -3'
miRNA:   3'- -GCUCA-UGCU--AGCgCGcugGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 8332 0.7 0.409404
Target:  5'- aGAGaUGCguucgacgcugaGAUUGCGCcGCUCGCGCGCa -3'
miRNA:   3'- gCUC-AUG------------CUAGCGCGcUGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 10968 0.7 0.409404
Target:  5'- uGGcGUGCGAaaucCGCauGCG-CCCGCGCGCg -3'
miRNA:   3'- gCU-CAUGCUa---GCG--CGCuGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 11641 0.67 0.590457
Target:  5'- aCGAGgAUGAUCGCgGCGACgagccagcucgucagCCGCgggaaGCGCu -3'
miRNA:   3'- -GCUCaUGCUAGCG-CGCUG---------------GGUG-----UGCG- -5'
27696 3' -55.2 NC_005882.1 + 11999 0.67 0.563966
Target:  5'- gCGGGcAC--UUGCGCGGCCaCGgGCGCg -3'
miRNA:   3'- -GCUCaUGcuAGCGCGCUGG-GUgUGCG- -5'
27696 3' -55.2 NC_005882.1 + 12377 0.66 0.652847
Target:  5'- uCGA--GCGGUucaaCGC-CGGCCgGCACGCg -3'
miRNA:   3'- -GCUcaUGCUA----GCGcGCUGGgUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 12688 0.66 0.641698
Target:  5'- uCGAGcuugGCGAccuUCGCGUcGCCgGCaaGCGCa -3'
miRNA:   3'- -GCUCa---UGCU---AGCGCGcUGGgUG--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.