Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27699 | 3' | -59.2 | NC_005882.1 | + | 16767 | 0.68 | 0.271295 |
Target: 5'- cCGGCCUGCGcGGACG-CGC-GCGUc- -3' miRNA: 3'- -GUCGGGCGCuUCUGCuGCGaCGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 1391 | 0.68 | 0.28126 |
Target: 5'- aCGGCCCGCuccAGGCGuuucugaagcuguuUGCUGCGCg- -3' miRNA: 3'- -GUCGGGCGcu-UCUGCu-------------GCGACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 34044 | 0.67 | 0.292256 |
Target: 5'- aCAGCUCgaaacuuGCGAcGACGGCGUucauucaaggUGCGCUUg -3' miRNA: 3'- -GUCGGG-------CGCUuCUGCUGCG----------ACGCGAA- -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 25560 | 0.67 | 0.299772 |
Target: 5'- gCGGCCCuuGCGAcccGGcuggcgcGCGGCGCcGCGCUg -3' miRNA: 3'- -GUCGGG--CGCU---UC-------UGCUGCGaCGCGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 25549 | 0.67 | 0.30821 |
Target: 5'- uGGCCgCGCagcucGGCGAUGUUGCGCa- -3' miRNA: 3'- gUCGG-GCGcuu--CUGCUGCGACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 19399 | 0.67 | 0.324016 |
Target: 5'- aAGUCgCGCGAcaAGACGAUGCgccgaccaGCGCa- -3' miRNA: 3'- gUCGG-GCGCU--UCUGCUGCGa-------CGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 21591 | 0.67 | 0.324016 |
Target: 5'- -uGCCCGuCGAccGGAaGGCGCcGCGCUc -3' miRNA: 3'- guCGGGC-GCU--UCUgCUGCGaCGCGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 21096 | 0.66 | 0.340417 |
Target: 5'- gCAGCCggCGCGAAGGCGcucgGCGUUGC-Cg- -3' miRNA: 3'- -GUCGG--GCGCUUCUGC----UGCGACGcGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 135 | 0.66 | 0.340417 |
Target: 5'- aGGCCCGCGAGGGCcGCGUcagGC-Cg- -3' miRNA: 3'- gUCGGGCGCUUCUGcUGCGa--CGcGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 2702 | 0.66 | 0.34884 |
Target: 5'- gGGCuuGUGGuccgGACGCUGCGCa- -3' miRNA: 3'- gUCGggCGCUucugCUGCGACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 30008 | 0.66 | 0.366128 |
Target: 5'- gUAGCcgccgCCGCGAucgAGACGAUGUcGCGCc- -3' miRNA: 3'- -GUCG-----GGCGCU---UCUGCUGCGaCGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 6852 | 0.66 | 0.366128 |
Target: 5'- gAGCuggCCGCGAAGAaGACGC-GCGUc- -3' miRNA: 3'- gUCG---GGCGCUUCUgCUGCGaCGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 30336 | 0.66 | 0.37499 |
Target: 5'- aCAGCCggUGCGAGGACGGUGUgauucucgGCGCc- -3' miRNA: 3'- -GUCGG--GCGCUUCUGCUGCGa-------CGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 18169 | 0.66 | 0.383997 |
Target: 5'- aAGCCgGCcaucaGAAGGCuGGCGCgaUGCGCa- -3' miRNA: 3'- gUCGGgCG-----CUUCUG-CUGCG--ACGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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