miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27699 3' -59.2 NC_005882.1 + 3295 0.68 0.263667
Target:  5'- uCGGCCCguaccucGCGAAGucgucCGACguGCUGCGCg- -3'
miRNA:   3'- -GUCGGG-------CGCUUCu----GCUG--CGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 16767 0.68 0.271295
Target:  5'- cCGGCCUGCGcGGACG-CGC-GCGUc- -3'
miRNA:   3'- -GUCGGGCGCuUCUGCuGCGaCGCGaa -5'
27699 3' -59.2 NC_005882.1 + 1391 0.68 0.28126
Target:  5'- aCGGCCCGCuccAGGCGuuucugaagcuguuUGCUGCGCg- -3'
miRNA:   3'- -GUCGGGCGcu-UCUGCu-------------GCGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 25549 0.67 0.30821
Target:  5'- uGGCCgCGCagcucGGCGAUGUUGCGCa- -3'
miRNA:   3'- gUCGG-GCGcuu--CUGCUGCGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 30008 0.66 0.366128
Target:  5'- gUAGCcgccgCCGCGAucgAGACGAUGUcGCGCc- -3'
miRNA:   3'- -GUCG-----GGCGCU---UCUGCUGCGaCGCGaa -5'
27699 3' -59.2 NC_005882.1 + 23286 0.68 0.257556
Target:  5'- cCGGCCCGCGcccGGCcaGCGCcUGCGCg- -3'
miRNA:   3'- -GUCGGGCGCuu-CUGc-UGCG-ACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 4764 0.68 0.250902
Target:  5'- cCGGCCCGCGA--GCGGgucaacagcaacCGCUGCaGCUc -3'
miRNA:   3'- -GUCGGGCGCUucUGCU------------GCGACG-CGAa -5'
27699 3' -59.2 NC_005882.1 + 24540 0.69 0.24439
Target:  5'- aGGCCCGcCGAagcgggccaAGACGACaacgaCUGCGCa- -3'
miRNA:   3'- gUCGGGC-GCU---------UCUGCUGc----GACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 4208 0.69 0.23802
Target:  5'- uCGGgCgGCGGcaAGACGACGCugaUGCGCg- -3'
miRNA:   3'- -GUCgGgCGCU--UCUGCUGCG---ACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 26706 0.7 0.197242
Target:  5'- aGGUCCGUGAGcGACGGCaGCaGCGCg- -3'
miRNA:   3'- gUCGGGCGCUU-CUGCUG-CGaCGCGaa -5'
27699 3' -59.2 NC_005882.1 + 22469 0.7 0.186254
Target:  5'- gGGCgCGCGGGcuuggucGACGGCGCUGCGg-- -3'
miRNA:   3'- gUCGgGCGCUU-------CUGCUGCGACGCgaa -5'
27699 3' -59.2 NC_005882.1 + 19264 0.71 0.153874
Target:  5'- aGGCCCuuGAGGGcCGGCgGCUGCGCa- -3'
miRNA:   3'- gUCGGGcgCUUCU-GCUG-CGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 13889 0.72 0.133691
Target:  5'- aUAGCCCGUGAAGuugcccuCGACGagcGCGCUUu -3'
miRNA:   3'- -GUCGGGCGCUUCu------GCUGCga-CGCGAA- -5'
27699 3' -59.2 NC_005882.1 + 6852 0.66 0.366128
Target:  5'- gAGCuggCCGCGAAGAaGACGC-GCGUc- -3'
miRNA:   3'- gUCG---GGCGCUUCUgCUGCGaCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.