miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27699 3' -59.2 NC_005882.1 + 31402 1.04 0.000471
Target:  5'- gCAGCCCGCGAAGACGACGCUGCGCUUc -3'
miRNA:   3'- -GUCGGGCGCUUCUGCUGCGACGCGAA- -5'
27699 3' -59.2 NC_005882.1 + 25560 0.67 0.299772
Target:  5'- gCGGCCCuuGCGAcccGGcuggcgcGCGGCGCcGCGCUg -3'
miRNA:   3'- -GUCGGG--CGCU---UC-------UGCUGCGaCGCGAa -5'
27699 3' -59.2 NC_005882.1 + 19399 0.67 0.324016
Target:  5'- aAGUCgCGCGAcaAGACGAUGCgccgaccaGCGCa- -3'
miRNA:   3'- gUCGG-GCGCU--UCUGCUGCGa-------CGCGaa -5'
27699 3' -59.2 NC_005882.1 + 21591 0.67 0.324016
Target:  5'- -uGCCCGuCGAccGGAaGGCGCcGCGCUc -3'
miRNA:   3'- guCGGGC-GCU--UCUgCUGCGaCGCGAa -5'
27699 3' -59.2 NC_005882.1 + 21096 0.66 0.340417
Target:  5'- gCAGCCggCGCGAAGGCGcucgGCGUUGC-Cg- -3'
miRNA:   3'- -GUCGG--GCGCUUCUGC----UGCGACGcGaa -5'
27699 3' -59.2 NC_005882.1 + 135 0.66 0.340417
Target:  5'- aGGCCCGCGAGGGCcGCGUcagGC-Cg- -3'
miRNA:   3'- gUCGGGCGCUUCUGcUGCGa--CGcGaa -5'
27699 3' -59.2 NC_005882.1 + 2702 0.66 0.34884
Target:  5'- gGGCuuGUGGuccgGACGCUGCGCa- -3'
miRNA:   3'- gUCGggCGCUucugCUGCGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 30336 0.66 0.37499
Target:  5'- aCAGCCggUGCGAGGACGGUGUgauucucgGCGCc- -3'
miRNA:   3'- -GUCGG--GCGCUUCUGCUGCGa-------CGCGaa -5'
27699 3' -59.2 NC_005882.1 + 18169 0.66 0.383997
Target:  5'- aAGCCgGCcaucaGAAGGCuGGCGCgaUGCGCa- -3'
miRNA:   3'- gUCGGgCG-----CUUCUG-CUGCG--ACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 34044 0.67 0.292256
Target:  5'- aCAGCUCgaaacuuGCGAcGACGGCGUucauucaaggUGCGCUUg -3'
miRNA:   3'- -GUCGGG-------CGCUuCUGCUGCG----------ACGCGAA- -5'
27699 3' -59.2 NC_005882.1 + 25408 0.68 0.264353
Target:  5'- uCGGCCgCGuCGccGACGA-GCUGCGCg- -3'
miRNA:   3'- -GUCGG-GC-GCuuCUGCUgCGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 13334 0.68 0.257556
Target:  5'- -uGCgCCGCGAAGACuACG-UGCGCa- -3'
miRNA:   3'- guCG-GGCGCUUCUGcUGCgACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 30621 0.74 0.092118
Target:  5'- uGGCCggaucggGCGgcGAUGGCGCUGCGCUg -3'
miRNA:   3'- gUCGGg------CGCuuCUGCUGCGACGCGAa -5'
27699 3' -59.2 NC_005882.1 + 25962 0.72 0.133691
Target:  5'- -cGCUCGgGAucaaGGGCGACGCgGCGCUg -3'
miRNA:   3'- guCGGGCgCU----UCUGCUGCGaCGCGAa -5'
27699 3' -59.2 NC_005882.1 + 14127 0.7 0.191941
Target:  5'- aAGgCCGCGAAGaacaucGCGACGCUggcccGCGCg- -3'
miRNA:   3'- gUCgGGCGCUUC------UGCUGCGA-----CGCGaa -5'
27699 3' -59.2 NC_005882.1 + 27812 0.7 0.191941
Target:  5'- -uGCUCGCGAAGcGCGAgCGCcGCGCg- -3'
miRNA:   3'- guCGGGCGCUUC-UGCU-GCGaCGCGaa -5'
27699 3' -59.2 NC_005882.1 + 26858 0.69 0.213343
Target:  5'- aCGGUCgggGCGAAGugGACGCUguuucgcGCGCUc -3'
miRNA:   3'- -GUCGGg--CGCUUCugCUGCGA-------CGCGAa -5'
27699 3' -59.2 NC_005882.1 + 15533 0.69 0.213918
Target:  5'- -cGCCCGUGAAGGCGGCGUU-CGa-- -3'
miRNA:   3'- guCGGGCGCUUCUGCUGCGAcGCgaa -5'
27699 3' -59.2 NC_005882.1 + 30067 0.69 0.219739
Target:  5'- aCGGCgucaCCGCGaAAGGCGACGUcgGCGUUg -3'
miRNA:   3'- -GUCG----GGCGC-UUCUGCUGCGa-CGCGAa -5'
27699 3' -59.2 NC_005882.1 + 2429 0.68 0.250902
Target:  5'- cCAGCUCGCGA--ACGAgGCgaucGCGCUc -3'
miRNA:   3'- -GUCGGGCGCUucUGCUgCGa---CGCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.