Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27699 | 3' | -59.2 | NC_005882.1 | + | 135 | 0.66 | 0.340417 |
Target: 5'- aGGCCCGCGAGGGCcGCGUcagGC-Cg- -3' miRNA: 3'- gUCGGGCGCUUCUGcUGCGa--CGcGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 1391 | 0.68 | 0.28126 |
Target: 5'- aCGGCCCGCuccAGGCGuuucugaagcuguuUGCUGCGCg- -3' miRNA: 3'- -GUCGGGCGcu-UCUGCu-------------GCGACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 2429 | 0.68 | 0.250902 |
Target: 5'- cCAGCUCGCGA--ACGAgGCgaucGCGCUc -3' miRNA: 3'- -GUCGGGCGCUucUGCUgCGa---CGCGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 2702 | 0.66 | 0.34884 |
Target: 5'- gGGCuuGUGGuccgGACGCUGCGCa- -3' miRNA: 3'- gUCGggCGCUucugCUGCGACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 3295 | 0.68 | 0.263667 |
Target: 5'- uCGGCCCguaccucGCGAAGucgucCGACguGCUGCGCg- -3' miRNA: 3'- -GUCGGG-------CGCUUCu----GCUG--CGACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 4208 | 0.69 | 0.23802 |
Target: 5'- uCGGgCgGCGGcaAGACGACGCugaUGCGCg- -3' miRNA: 3'- -GUCgGgCGCU--UCUGCUGCG---ACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 4764 | 0.68 | 0.250902 |
Target: 5'- cCGGCCCGCGA--GCGGgucaacagcaacCGCUGCaGCUc -3' miRNA: 3'- -GUCGGGCGCUucUGCU------------GCGACG-CGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 6852 | 0.66 | 0.366128 |
Target: 5'- gAGCuggCCGCGAAGAaGACGC-GCGUc- -3' miRNA: 3'- gUCG---GGCGCUUCUgCUGCGaCGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 13334 | 0.68 | 0.257556 |
Target: 5'- -uGCgCCGCGAAGACuACG-UGCGCa- -3' miRNA: 3'- guCG-GGCGCUUCUGcUGCgACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 13889 | 0.72 | 0.133691 |
Target: 5'- aUAGCCCGUGAAGuugcccuCGACGagcGCGCUUu -3' miRNA: 3'- -GUCGGGCGCUUCu------GCUGCga-CGCGAA- -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 14127 | 0.7 | 0.191941 |
Target: 5'- aAGgCCGCGAAGaacaucGCGACGCUggcccGCGCg- -3' miRNA: 3'- gUCgGGCGCUUC------UGCUGCGA-----CGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 15533 | 0.69 | 0.213918 |
Target: 5'- -cGCCCGUGAAGGCGGCGUU-CGa-- -3' miRNA: 3'- guCGGGCGCUUCUGCUGCGAcGCgaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 16767 | 0.68 | 0.271295 |
Target: 5'- cCGGCCUGCGcGGACG-CGC-GCGUc- -3' miRNA: 3'- -GUCGGGCGCuUCUGCuGCGaCGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 18169 | 0.66 | 0.383997 |
Target: 5'- aAGCCgGCcaucaGAAGGCuGGCGCgaUGCGCa- -3' miRNA: 3'- gUCGGgCG-----CUUCUG-CUGCG--ACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 19264 | 0.71 | 0.153874 |
Target: 5'- aGGCCCuuGAGGGcCGGCgGCUGCGCa- -3' miRNA: 3'- gUCGGGcgCUUCU-GCUG-CGACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 19399 | 0.67 | 0.324016 |
Target: 5'- aAGUCgCGCGAcaAGACGAUGCgccgaccaGCGCa- -3' miRNA: 3'- gUCGG-GCGCU--UCUGCUGCGa-------CGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 21096 | 0.66 | 0.340417 |
Target: 5'- gCAGCCggCGCGAAGGCGcucgGCGUUGC-Cg- -3' miRNA: 3'- -GUCGG--GCGCUUCUGC----UGCGACGcGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 21591 | 0.67 | 0.324016 |
Target: 5'- -uGCCCGuCGAccGGAaGGCGCcGCGCUc -3' miRNA: 3'- guCGGGC-GCU--UCUgCUGCGaCGCGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 22469 | 0.7 | 0.186254 |
Target: 5'- gGGCgCGCGGGcuuggucGACGGCGCUGCGg-- -3' miRNA: 3'- gUCGgGCGCUU-------CUGCUGCGACGCgaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 23286 | 0.68 | 0.257556 |
Target: 5'- cCGGCCCGCGcccGGCcaGCGCcUGCGCg- -3' miRNA: 3'- -GUCGGGCGCuu-CUGc-UGCG-ACGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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