miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27701 3' -57.3 NC_005882.1 + 2039 0.66 0.491078
Target:  5'- -cUCGCAUUGCCuccagCCagCGCGGAUCg -3'
miRNA:   3'- uaGGCGUGACGGcaa--GGa-GCGUCUGG- -5'
27701 3' -57.3 NC_005882.1 + 5179 0.66 0.491078
Target:  5'- cGUCuCGCGC--CCG-UCCUCGCcagucaGGACCa -3'
miRNA:   3'- -UAG-GCGUGacGGCaAGGAGCG------UCUGG- -5'
27701 3' -57.3 NC_005882.1 + 29760 0.66 0.491078
Target:  5'- uUCCGCACggGCCGgcUCCaaggcaacgcUGCAGACg -3'
miRNA:   3'- uAGGCGUGa-CGGCa-AGGa---------GCGUCUGg -5'
27701 3' -57.3 NC_005882.1 + 14246 0.66 0.480631
Target:  5'- uUCCGCGCgUGCCugcaCCUC-CAGGCg -3'
miRNA:   3'- uAGGCGUG-ACGGcaa-GGAGcGUCUGg -5'
27701 3' -57.3 NC_005882.1 + 17276 0.66 0.470293
Target:  5'- -aUCGCGCgggcaaGCCGUUCCU-GCAGcgcguCCg -3'
miRNA:   3'- uaGGCGUGa-----CGGCAAGGAgCGUCu----GG- -5'
27701 3' -57.3 NC_005882.1 + 12480 0.66 0.470293
Target:  5'- aAUCaCGCGCggguaGCCGcggUUCUCGCGGAa- -3'
miRNA:   3'- -UAG-GCGUGa----CGGCa--AGGAGCGUCUgg -5'
27701 3' -57.3 NC_005882.1 + 4693 0.66 0.470293
Target:  5'- -gCUGCAgcggUUGCUGUUgaccCgCUCGCGGGCCg -3'
miRNA:   3'- uaGGCGU----GACGGCAA----G-GAGCGUCUGG- -5'
27701 3' -57.3 NC_005882.1 + 18300 0.67 0.438992
Target:  5'- -aCCGCGgccggccUUGCgCGgcgaaguugUCCUCGguGACCa -3'
miRNA:   3'- uaGGCGU-------GACG-GCa--------AGGAGCguCUGG- -5'
27701 3' -57.3 NC_005882.1 + 16716 0.67 0.43013
Target:  5'- cGUCCGCGCagGCCGggCUUgaGguGACg -3'
miRNA:   3'- -UAGGCGUGa-CGGCaaGGAg-CguCUGg -5'
27701 3' -57.3 NC_005882.1 + 27577 0.67 0.43013
Target:  5'- -gCCGCGCgcgcgGCCGccggcauggCgaCGCAGGCCg -3'
miRNA:   3'- uaGGCGUGa----CGGCaa-------GgaGCGUCUGG- -5'
27701 3' -57.3 NC_005882.1 + 16085 0.67 0.43013
Target:  5'- -gUCGCGaagucgaucGCCGacgUCUUCGCGGACCu -3'
miRNA:   3'- uaGGCGUga-------CGGCa--AGGAGCGUCUGG- -5'
27701 3' -57.3 NC_005882.1 + 4373 0.67 0.420407
Target:  5'- gAUCgGUAUUGCUGUUCggCUgGgAGACCg -3'
miRNA:   3'- -UAGgCGUGACGGCAAG--GAgCgUCUGG- -5'
27701 3' -57.3 NC_005882.1 + 4804 0.67 0.410818
Target:  5'- gGUCCGCGCUccagucgacGCCGgcagCUUCGaCAGcgGCCu -3'
miRNA:   3'- -UAGGCGUGA---------CGGCaa--GGAGC-GUC--UGG- -5'
27701 3' -57.3 NC_005882.1 + 8137 0.67 0.392053
Target:  5'- gAUCUGCAUgucuucgGCCGUcgCgUCGCGG-CCg -3'
miRNA:   3'- -UAGGCGUGa------CGGCAa-GgAGCGUCuGG- -5'
27701 3' -57.3 NC_005882.1 + 15576 0.67 0.392053
Target:  5'- -cCCGaaggaUGCCGacgUgCUCGCGGACCu -3'
miRNA:   3'- uaGGCgug--ACGGCa--AgGAGCGUCUGG- -5'
27701 3' -57.3 NC_005882.1 + 198 0.68 0.382882
Target:  5'- uUCgGC-CUGaCgCGgcCCUCGCGGGCCu -3'
miRNA:   3'- uAGgCGuGAC-G-GCaaGGAGCGUCUGG- -5'
27701 3' -57.3 NC_005882.1 + 4878 0.68 0.372961
Target:  5'- -gCCGCugucgaaGCUGCCGgcgUCgacuggagCGCGGACCg -3'
miRNA:   3'- uaGGCG-------UGACGGCaa-GGa-------GCGUCUGG- -5'
27701 3' -57.3 NC_005882.1 + 26640 0.68 0.364974
Target:  5'- -gCCGCgcgcuGCUGCCG-UCgCUCaCGGACCu -3'
miRNA:   3'- uaGGCG-----UGACGGCaAG-GAGcGUCUGG- -5'
27701 3' -57.3 NC_005882.1 + 29179 0.69 0.314801
Target:  5'- -gCCgGCGC-GCCGUUgCUCGCGugcGGCCg -3'
miRNA:   3'- uaGG-CGUGaCGGCAAgGAGCGU---CUGG- -5'
27701 3' -57.3 NC_005882.1 + 1366 0.69 0.306964
Target:  5'- -gCUGUuuGCUGCgCGcUUCCUCGCGG-CCa -3'
miRNA:   3'- uaGGCG--UGACG-GC-AAGGAGCGUCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.