miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27704 3' -51.4 NC_005882.1 + 12540 0.69 0.589275
Target:  5'- -gCGGCGGCGGC-CGgcGCU-GCGGCg -3'
miRNA:   3'- aaGCUGUUGUCGuGCuuCGAgCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 12981 0.67 0.718829
Target:  5'- -cCGGCGGCAGCACu--GgUCGCGGg -3'
miRNA:   3'- aaGCUGUUGUCGUGcuuCgAGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 13019 0.67 0.707275
Target:  5'- gUCGACGcCAGCcgcCGcAGC-CGCGACa -3'
miRNA:   3'- aAGCUGUuGUCGu--GCuUCGaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 13411 0.67 0.730283
Target:  5'- cUUCGAUGACGgucugguugcGCACGuAGUcuUCGCGGCg -3'
miRNA:   3'- -AAGCUGUUGU----------CGUGCuUCG--AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 13576 0.66 0.763903
Target:  5'- -cCGACAucACGGCGCuuGAGGUgCGCAAg -3'
miRNA:   3'- aaGCUGU--UGUCGUG--CUUCGaGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 13784 0.7 0.542568
Target:  5'- cUUGGcCGGCcGCGCGAugcccGGCUCGCAAUc -3'
miRNA:   3'- aAGCU-GUUGuCGUGCU-----UCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 14165 0.73 0.354459
Target:  5'- cUUgGACAGCAGCGCGAuacGUUCGCc-- -3'
miRNA:   3'- -AAgCUGUUGUCGUGCUu--CGAGCGuug -5'
27704 3' -51.4 NC_005882.1 + 14393 0.66 0.785554
Target:  5'- -aCGGCAGCAGgACGgcGggCGCAc- -3'
miRNA:   3'- aaGCUGUUGUCgUGCuuCgaGCGUug -5'
27704 3' -51.4 NC_005882.1 + 14431 0.67 0.682751
Target:  5'- --gGGCGaaGCAGCcgauucaGCGuuGCUCGCAGCc -3'
miRNA:   3'- aagCUGU--UGUCG-------UGCuuCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 14720 0.68 0.660345
Target:  5'- aUCGACGagGCAGCguuccACGAgcAGCUCgGCGAg -3'
miRNA:   3'- aAGCUGU--UGUCG-----UGCU--UCGAG-CGUUg -5'
27704 3' -51.4 NC_005882.1 + 15136 0.66 0.762803
Target:  5'- -cCGACAu--GCGCGAcucgaucAGCgcgCGCGACa -3'
miRNA:   3'- aaGCUGUuguCGUGCU-------UCGa--GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 15592 0.67 0.730283
Target:  5'- cUUCGaACGccgccuucacggGCGGCAUGu-GCUCGCGAUa -3'
miRNA:   3'- -AAGC-UGU------------UGUCGUGCuuCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 16044 0.66 0.741623
Target:  5'- -cCGACGugcGCGuccGCGCGcAGCUCGCggUa -3'
miRNA:   3'- aaGCUGU---UGU---CGUGCuUCGAGCGuuG- -5'
27704 3' -51.4 NC_005882.1 + 17223 0.67 0.730283
Target:  5'- cUCGGcCAGCAuGC-CGAgcAGCUCGuCGGCa -3'
miRNA:   3'- aAGCU-GUUGU-CGuGCU--UCGAGC-GUUG- -5'
27704 3' -51.4 NC_005882.1 + 17288 0.66 0.763903
Target:  5'- cUCGGCuACuGCAUGAAGCU-GCcGCc -3'
miRNA:   3'- aAGCUGuUGuCGUGCUUCGAgCGuUG- -5'
27704 3' -51.4 NC_005882.1 + 17323 0.68 0.670977
Target:  5'- gUCGACcGCuucaGGCAUggagacgcccccaGAGGUUCGCGACg -3'
miRNA:   3'- aAGCUGuUG----UCGUG-------------CUUCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 17931 0.72 0.392216
Target:  5'- -cCGGCgAGCuGCGCGAGG-UCGCGACg -3'
miRNA:   3'- aaGCUG-UUGuCGUGCUUCgAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 18698 0.67 0.730283
Target:  5'- --aGGCGcgcAgAGCGCGAucGGCUCGuCGACa -3'
miRNA:   3'- aagCUGU---UgUCGUGCU--UCGAGC-GUUG- -5'
27704 3' -51.4 NC_005882.1 + 20911 0.69 0.61292
Target:  5'- cUCGGgcauCAACGGC-UGAucGCUCGCGGCa -3'
miRNA:   3'- aAGCU----GUUGUCGuGCUu-CGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 21571 0.69 0.57751
Target:  5'- -gCGACAGCGGCAgGuuguAGCggccgCGCAAg -3'
miRNA:   3'- aaGCUGUUGUCGUgCu---UCGa----GCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.