miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27704 3' -51.4 NC_005882.1 + 2078 0.73 0.354459
Target:  5'- aUCGGC-GCAGCGCGA-GCaCGCGGCc -3'
miRNA:   3'- aAGCUGuUGUCGUGCUuCGaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 2501 0.68 0.636642
Target:  5'- aUCGAcCGugAGCGCGAucgccucGUUCGCGAg -3'
miRNA:   3'- aAGCU-GUugUCGUGCUu------CGAGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 2827 0.75 0.271674
Target:  5'- aUUCGACcuGGCGGCGCGAAGCaauacgaCGUAGCu -3'
miRNA:   3'- -AAGCUG--UUGUCGUGCUUCGa------GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 3299 0.67 0.707275
Target:  5'- cUUCGGC--CAGCACGcgguagcccAGGCcgCGCAGCg -3'
miRNA:   3'- -AAGCUGuuGUCGUGC---------UUCGa-GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 3479 0.7 0.542569
Target:  5'- -gUGACGAcCGGCACGcccAGGCcCGCGGCg -3'
miRNA:   3'- aaGCUGUU-GUCGUGC---UUCGaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 3938 0.67 0.707275
Target:  5'- aUCGACGAagcGCACGcgcuGCcgaUCGCGACg -3'
miRNA:   3'- aAGCUGUUgu-CGUGCuu--CG---AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 4857 0.66 0.774814
Target:  5'- gUCGACuGgAGCGCGGaccgguuccgcuGGCU-GCAACa -3'
miRNA:   3'- aAGCUGuUgUCGUGCU------------UCGAgCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 4870 0.71 0.442935
Target:  5'- -gCGAgAGCGGCGCGAGuucgacGCgcggCGCAACg -3'
miRNA:   3'- aaGCUgUUGUCGUGCUU------CGa---GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 5949 0.68 0.660345
Target:  5'- -cCGGCuucagguaguACAGCACGcacAGGCUCGCGu- -3'
miRNA:   3'- aaGCUGu---------UGUCGUGC---UUCGAGCGUug -5'
27704 3' -51.4 NC_005882.1 + 6096 0.7 0.531071
Target:  5'- aUCgGACAACGGC-CGcAGCUCGCc-- -3'
miRNA:   3'- aAG-CUGUUGUCGuGCuUCGAGCGuug -5'
27704 3' -51.4 NC_005882.1 + 6540 0.66 0.738233
Target:  5'- -cCGACuucuCAcGCGCcgcuaacugauucgGggGCUCGCGACg -3'
miRNA:   3'- aaGCUGuu--GU-CGUG--------------CuuCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 6682 0.66 0.741623
Target:  5'- uUUCGAaGGCGGCACGcAGgUUGCcGCg -3'
miRNA:   3'- -AAGCUgUUGUCGUGCuUCgAGCGuUG- -5'
27704 3' -51.4 NC_005882.1 + 7612 0.66 0.741623
Target:  5'- cUgGAguGCgccgAGCACGAAG-UCGCAGCa -3'
miRNA:   3'- aAgCUguUG----UCGUGCUUCgAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 9835 0.66 0.784488
Target:  5'- gUUCGAgAACGGUACGccguGGUugacguugacaugUCGCGACc -3'
miRNA:   3'- -AAGCUgUUGUCGUGCu---UCG-------------AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 10674 0.75 0.271674
Target:  5'- gUCGGCAGCGGCG-GAGGCggcgGCAGCg -3'
miRNA:   3'- aAGCUGUUGUCGUgCUUCGag--CGUUG- -5'
27704 3' -51.4 NC_005882.1 + 10790 0.73 0.354459
Target:  5'- gUCGACGGCGGUcuACGggGUgcuugaGCAGCa -3'
miRNA:   3'- aAGCUGUUGUCG--UGCuuCGag----CGUUG- -5'
27704 3' -51.4 NC_005882.1 + 11653 0.68 0.672157
Target:  5'- -gCGAUGGCuGCaACGAGGaugaUCGCGGCg -3'
miRNA:   3'- aaGCUGUUGuCG-UGCUUCg---AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 11725 0.7 0.508353
Target:  5'- -gCGACGACGGcCGCGAGGCUgaCGaGACu -3'
miRNA:   3'- aaGCUGUUGUC-GUGCUUCGA--GCgUUG- -5'
27704 3' -51.4 NC_005882.1 + 11878 0.65 0.792962
Target:  5'- -gCGGCGA-AGCAUGGccgcggcgaacaccAGCUCGUAGCc -3'
miRNA:   3'- aaGCUGUUgUCGUGCU--------------UCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 11981 0.66 0.763903
Target:  5'- -aCGggcGCGGCGGCGCcGAGCaaCGCGACg -3'
miRNA:   3'- aaGC---UGUUGUCGUGcUUCGa-GCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.