miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27704 3' -51.4 NC_005882.1 + 26282 0.68 0.648502
Target:  5'- gUCGcCGGCGGCuauucgagcuACGAAgGCUCGCuGCa -3'
miRNA:   3'- aAGCuGUUGUCG----------UGCUU-CGAGCGuUG- -5'
27704 3' -51.4 NC_005882.1 + 6096 0.7 0.531071
Target:  5'- aUCgGACAACGGC-CGcAGCUCGCc-- -3'
miRNA:   3'- aAG-CUGUUGUCGuGCuUCGAGCGuug -5'
27704 3' -51.4 NC_005882.1 + 3479 0.7 0.542569
Target:  5'- -gUGACGAcCGGCACGcccAGGCcCGCGGCg -3'
miRNA:   3'- aaGCUGUU-GUCGUGC---UUCGaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 26935 0.7 0.554147
Target:  5'- uUUCGGCAugggGCgGGCGCGGccggcaAGUUCGCGGCc -3'
miRNA:   3'- -AAGCUGU----UG-UCGUGCU------UCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 12540 0.69 0.589275
Target:  5'- -gCGGCGGCGGC-CGgcGCU-GCGGCg -3'
miRNA:   3'- aaGCUGUUGUCGuGCuuCGAgCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 27802 0.69 0.589275
Target:  5'- cUCGACGACcuGCucGCGAAGCgcgagCGCcGCg -3'
miRNA:   3'- aAGCUGUUGu-CG--UGCUUCGa----GCGuUG- -5'
27704 3' -51.4 NC_005882.1 + 20911 0.69 0.61292
Target:  5'- cUCGGgcauCAACGGC-UGAucGCUCGCGGCa -3'
miRNA:   3'- aAGCU----GUUGUCGuGCUu-CGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 26160 0.68 0.624778
Target:  5'- -cCGGCAGUGGCgACGAAGC-CGUGACg -3'
miRNA:   3'- aaGCUGUUGUCG-UGCUUCGaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 25209 0.68 0.636642
Target:  5'- --aGACGGCgAGCACGAcgccGGCaaUCGCGAUc -3'
miRNA:   3'- aagCUGUUG-UCGUGCU----UCG--AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 26549 0.7 0.508354
Target:  5'- aUCGACcagGACuacgugcgccGCGCGGAGCUgGCGACc -3'
miRNA:   3'- aAGCUG---UUGu---------CGUGCUUCGAgCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 23196 0.7 0.508354
Target:  5'- aUCGAugcgcCGAuCGGCACGAcGCUCGCGcagGCg -3'
miRNA:   3'- aAGCU-----GUU-GUCGUGCUuCGAGCGU---UG- -5'
27704 3' -51.4 NC_005882.1 + 4870 0.71 0.442935
Target:  5'- -gCGAgAGCGGCGCGAGuucgacGCgcggCGCAACg -3'
miRNA:   3'- aaGCUgUUGUCGUGCUU------CGa---GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 34036 0.78 0.177506
Target:  5'- gUUCGAUAACAGCuCGAAaCUUGCGACg -3'
miRNA:   3'- -AAGCUGUUGUCGuGCUUcGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 23745 0.77 0.217226
Target:  5'- aUCGGCGACGGCGCGcuGCUCgGCuuCa -3'
miRNA:   3'- aAGCUGUUGUCGUGCuuCGAG-CGuuG- -5'
27704 3' -51.4 NC_005882.1 + 33647 0.77 0.223485
Target:  5'- aUUCGACAACAcgACGAAaCUCGCGACg -3'
miRNA:   3'- -AAGCUGUUGUcgUGCUUcGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 26763 0.76 0.250066
Target:  5'- -cCGugAuCGGCAUGAAGgUCGCGACg -3'
miRNA:   3'- aaGCugUuGUCGUGCUUCgAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 28659 0.74 0.31934
Target:  5'- cUCGACGgcgaGCAGCGCGcuAAGUUCcGCGGCg -3'
miRNA:   3'- aAGCUGU----UGUCGUGC--UUCGAG-CGUUG- -5'
27704 3' -51.4 NC_005882.1 + 2078 0.73 0.354459
Target:  5'- aUCGGC-GCAGCGCGA-GCaCGCGGCc -3'
miRNA:   3'- aAGCUGuUGUCGUGCUuCGaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 10790 0.73 0.354459
Target:  5'- gUCGACGGCGGUcuACGggGUgcuugaGCAGCa -3'
miRNA:   3'- aAGCUGUUGUCG--UGCuuCGag----CGUUG- -5'
27704 3' -51.4 NC_005882.1 + 17931 0.72 0.392216
Target:  5'- -cCGGCgAGCuGCGCGAGG-UCGCGACg -3'
miRNA:   3'- aaGCUG-UUGuCGUGCUUCgAGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.