Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27704 | 3' | -51.4 | NC_005882.1 | + | 34441 | 1.09 | 0.001235 |
Target: 5'- aUUCGACAACAGCACGAAGCUCGCAACg -3' miRNA: 3'- -AAGCUGUUGUCGUGCUUCGAGCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 34036 | 0.78 | 0.177506 |
Target: 5'- gUUCGAUAACAGCuCGAAaCUUGCGACg -3' miRNA: 3'- -AAGCUGUUGUCGuGCUUcGAGCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 23745 | 0.77 | 0.217226 |
Target: 5'- aUCGGCGACGGCGCGcuGCUCgGCuuCa -3' miRNA: 3'- aAGCUGUUGUCGUGCuuCGAG-CGuuG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 33647 | 0.77 | 0.223485 |
Target: 5'- aUUCGACAACAcgACGAAaCUCGCGACg -3' miRNA: 3'- -AAGCUGUUGUcgUGCUUcGAGCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 26763 | 0.76 | 0.250066 |
Target: 5'- -cCGugAuCGGCAUGAAGgUCGCGACg -3' miRNA: 3'- aaGCugUuGUCGUGCUUCgAGCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 2827 | 0.75 | 0.271674 |
Target: 5'- aUUCGACcuGGCGGCGCGAAGCaauacgaCGUAGCu -3' miRNA: 3'- -AAGCUG--UUGUCGUGCUUCGa------GCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 10674 | 0.75 | 0.271674 |
Target: 5'- gUCGGCAGCGGCG-GAGGCggcgGCAGCg -3' miRNA: 3'- aAGCUGUUGUCGUgCUUCGag--CGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 28659 | 0.74 | 0.31934 |
Target: 5'- cUCGACGgcgaGCAGCGCGcuAAGUUCcGCGGCg -3' miRNA: 3'- aAGCUGU----UGUCGUGC--UUCGAG-CGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 10790 | 0.73 | 0.354459 |
Target: 5'- gUCGACGGCGGUcuACGggGUgcuugaGCAGCa -3' miRNA: 3'- aAGCUGUUGUCG--UGCuuCGag----CGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 2078 | 0.73 | 0.354459 |
Target: 5'- aUCGGC-GCAGCGCGA-GCaCGCGGCc -3' miRNA: 3'- aAGCUGuUGUCGUGCUuCGaGCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 14165 | 0.73 | 0.354459 |
Target: 5'- cUUgGACAGCAGCGCGAuacGUUCGCc-- -3' miRNA: 3'- -AAgCUGUUGUCGUGCUu--CGAGCGuug -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 17931 | 0.72 | 0.392216 |
Target: 5'- -cCGGCgAGCuGCGCGAGG-UCGCGACg -3' miRNA: 3'- aaGCUG-UUGuCGUGCUUCgAGCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 31102 | 0.72 | 0.392216 |
Target: 5'- aUCGACGgaaugACAcGCACGAc-CUCGCAGCg -3' miRNA: 3'- aAGCUGU-----UGU-CGUGCUucGAGCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 4870 | 0.71 | 0.442935 |
Target: 5'- -gCGAgAGCGGCGCGAGuucgacGCgcggCGCAACg -3' miRNA: 3'- aaGCUgUUGUCGUGCUU------CGa---GCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 27973 | 0.71 | 0.486056 |
Target: 5'- gUUCGGCGuaguCGGCAcCGAAGgUCGCAu- -3' miRNA: 3'- -AAGCUGUu---GUCGU-GCUUCgAGCGUug -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 11725 | 0.7 | 0.508353 |
Target: 5'- -gCGACGACGGcCGCGAGGCUgaCGaGACu -3' miRNA: 3'- aaGCUGUUGUC-GUGCUUCGA--GCgUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 23196 | 0.7 | 0.508354 |
Target: 5'- aUCGAugcgcCGAuCGGCACGAcGCUCGCGcagGCg -3' miRNA: 3'- aAGCU-----GUU-GUCGUGCUuCGAGCGU---UG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 26549 | 0.7 | 0.508354 |
Target: 5'- aUCGACcagGACuacgugcgccGCGCGGAGCUgGCGACc -3' miRNA: 3'- aAGCUG---UUGu---------CGUGCUUCGAgCGUUG- -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 6096 | 0.7 | 0.531071 |
Target: 5'- aUCgGACAACGGC-CGcAGCUCGCc-- -3' miRNA: 3'- aAG-CUGUUGUCGuGCuUCGAGCGuug -5' |
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27704 | 3' | -51.4 | NC_005882.1 | + | 26693 | 0.7 | 0.531071 |
Target: 5'- -aCGGCAGCAGCGCGcGGCcaacCGUGAUc -3' miRNA: 3'- aaGCUGUUGUCGUGCuUCGa---GCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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