Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27920 | 5' | -53.2 | NC_005886.2 | + | 15037 | 0.66 | 0.752848 |
Target: 5'- -cAAUCGUcggucggaugaaugAUCgCgCGGgGAUGCCGCGCg -3' miRNA: 3'- cuUUAGCA--------------UAG-G-GCCgUUGCGGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 24449 | 0.67 | 0.723647 |
Target: 5'- cGAGcgCG----CCGGCcaguGACGCCGCGCa -3' miRNA: 3'- -CUUuaGCauagGGCCG----UUGCGGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 16268 | 0.67 | 0.723647 |
Target: 5'- cGGcgCGUAaCCCGGCAG-GCgGUACa -3' miRNA: 3'- cUUuaGCAUaGGGCCGUUgCGgCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 13030 | 0.67 | 0.698206 |
Target: 5'- ----gCGUAUCcaccgggcuuacaaCCGGCGAUGCUGCGa -3' miRNA: 3'- cuuuaGCAUAG--------------GGCCGUUGCGGCGUg -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 23790 | 0.68 | 0.667891 |
Target: 5'- aGggGUCGaacAUCUaCGGCAcaACGuuGCGCa -3' miRNA: 3'- -CuuUAGCa--UAGG-GCCGU--UGCggCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 14538 | 0.68 | 0.656585 |
Target: 5'- -cGAUCGgaa-CCGGCGACG-CGUACg -3' miRNA: 3'- cuUUAGCauagGGCCGUUGCgGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 38902 | 0.68 | 0.656585 |
Target: 5'- cGGAUaCGUccgCUCGGCGAcCGCUGCGCu -3' miRNA: 3'- cUUUA-GCAua-GGGCCGUU-GCGGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 2148 | 0.68 | 0.633912 |
Target: 5'- aAAGUUGU-UgCCGGCGugGuuGCGCu -3' miRNA: 3'- cUUUAGCAuAgGGCCGUugCggCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 36964 | 0.69 | 0.611232 |
Target: 5'- ----aCGUAUCCCGaaagaccuGC-GCGCCGCAg -3' miRNA: 3'- cuuuaGCAUAGGGC--------CGuUGCGGCGUg -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 37964 | 0.71 | 0.46885 |
Target: 5'- gGAAAUacCGUAgauuUCCCGGCggUGgUGCACg -3' miRNA: 3'- -CUUUA--GCAU----AGGGCCGuuGCgGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 12997 | 0.71 | 0.448362 |
Target: 5'- cGAAAUUGUuguuaCCGGCAACGCUuGCAa -3' miRNA: 3'- -CUUUAGCAuag--GGCCGUUGCGG-CGUg -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 23401 | 0.72 | 0.438306 |
Target: 5'- cGGAUCGUAUUCCaGCuucucAACGaCCGCGCg -3' miRNA: 3'- cUUUAGCAUAGGGcCG-----UUGC-GGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 17471 | 0.72 | 0.408933 |
Target: 5'- --cGUCGaaccgCCCGGCAGUGCUGCACc -3' miRNA: 3'- cuuUAGCaua--GGGCCGUUGCGGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 8132 | 0.74 | 0.336918 |
Target: 5'- -cGAUCGUuaccuGUUCCGGCGGCGaaCCGUACg -3' miRNA: 3'- cuUUAGCA-----UAGGGCCGUUGC--GGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 38724 | 0.76 | 0.259842 |
Target: 5'- cAGAUCGUcgaccauGUUgCGGUAACGCUGCACa -3' miRNA: 3'- cUUUAGCA-------UAGgGCCGUUGCGGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 38606 | 0.76 | 0.253721 |
Target: 5'- cGAAUCGUugcuugguguUgCCGGCcGCGCCGCACu -3' miRNA: 3'- cUUUAGCAu---------AgGGCCGuUGCGGCGUG- -5' |
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27920 | 5' | -53.2 | NC_005886.2 | + | 2051 | 1.1 | 0.001035 |
Target: 5'- uGAAAUCGUAUCCCGGCAACGCCGCACa -3' miRNA: 3'- -CUUUAGCAUAGGGCCGUUGCGGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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