miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27922 5' -45.4 NC_005886.2 + 30651 0.66 0.996344
Target:  5'- uAGgCGUUGCuuucauGAUGAAuGUAUGCCu -3'
miRNA:   3'- -UCgGCGACGuu----UUGCUUuUAUAUGGc -5'
27922 5' -45.4 NC_005886.2 + 29018 0.66 0.994786
Target:  5'- cGCCgacauGCUGCGAcGCGAuguucAGAUAUAgCGu -3'
miRNA:   3'- uCGG-----CGACGUUuUGCU-----UUUAUAUgGC- -5'
27922 5' -45.4 NC_005886.2 + 22913 0.66 0.994786
Target:  5'- cGGUCGCuuucgUGCAGAacucggGCGAuAGcGUGCCGg -3'
miRNA:   3'- -UCGGCG-----ACGUUU------UGCUuUUaUAUGGC- -5'
27922 5' -45.4 NC_005886.2 + 11363 0.66 0.994786
Target:  5'- -uCCGCcaGCGAAGCGAGGAa--ACCGg -3'
miRNA:   3'- ucGGCGa-CGUUUUGCUUUUauaUGGC- -5'
27922 5' -45.4 NC_005886.2 + 34726 0.66 0.994786
Target:  5'- cAGCCGgUGCAGcACGuucAAUAUcggACCa -3'
miRNA:   3'- -UCGGCgACGUUuUGCuu-UUAUA---UGGc -5'
27922 5' -45.4 NC_005886.2 + 15896 0.66 0.994512
Target:  5'- uGCCGUUGCGGAacacacgucggagcGCGAuccguccgcgccGAucGUACCGg -3'
miRNA:   3'- uCGGCGACGUUU--------------UGCU------------UUuaUAUGGC- -5'
27922 5' -45.4 NC_005886.2 + 42941 0.66 0.993827
Target:  5'- cAGuuGCgGCAuuACGAAAugaaACCGg -3'
miRNA:   3'- -UCggCGaCGUuuUGCUUUuauaUGGC- -5'
27922 5' -45.4 NC_005886.2 + 44604 0.66 0.993827
Target:  5'- aAGCCGUgGCcGAGCGAuggcaaGCCGa -3'
miRNA:   3'- -UCGGCGaCGuUUUGCUuuuauaUGGC- -5'
27922 5' -45.4 NC_005886.2 + 34543 0.67 0.991484
Target:  5'- cGCUGCgcgUGCGGggUGGAuuugAUGCCGu -3'
miRNA:   3'- uCGGCG---ACGUUuuGCUUuua-UAUGGC- -5'
27922 5' -45.4 NC_005886.2 + 45074 0.67 0.990074
Target:  5'- uAGCCG-UGCGGAACGAAAcgcgGCUu -3'
miRNA:   3'- -UCGGCgACGUUUUGCUUUuauaUGGc -5'
27922 5' -45.4 NC_005886.2 + 10221 0.67 0.988488
Target:  5'- cAGCCGCUGCAcuaaaGAAGGcagGUACa- -3'
miRNA:   3'- -UCGGCGACGUuuug-CUUUUa--UAUGgc -5'
27922 5' -45.4 NC_005886.2 + 35585 0.67 0.986712
Target:  5'- uGCUGCacGUAAAGCGgcGggAUACCGg -3'
miRNA:   3'- uCGGCGa-CGUUUUGCuuUuaUAUGGC- -5'
27922 5' -45.4 NC_005886.2 + 32530 0.68 0.983442
Target:  5'- cGGCCGCUGCAAAcccugcauGCGcugcacgcACCGc -3'
miRNA:   3'- -UCGGCGACGUUU--------UGCuuuuaua-UGGC- -5'
27922 5' -45.4 NC_005886.2 + 29298 0.68 0.977442
Target:  5'- cGGCCGCUGC-AAACGc------GCCGu -3'
miRNA:   3'- -UCGGCGACGuUUUGCuuuuauaUGGC- -5'
27922 5' -45.4 NC_005886.2 + 46203 0.68 0.974518
Target:  5'- cGGCaagaaaGUUGCAGacaguGACGGAucUGUGCCGa -3'
miRNA:   3'- -UCGg-----CGACGUU-----UUGCUUuuAUAUGGC- -5'
27922 5' -45.4 NC_005886.2 + 13298 0.68 0.974518
Target:  5'- uGCCGCcG-AAAACGAAAugcccgAUACCGu -3'
miRNA:   3'- uCGGCGaCgUUUUGCUUUua----UAUGGC- -5'
27922 5' -45.4 NC_005886.2 + 47262 0.69 0.971328
Target:  5'- uGCCGCUG----GCGAAcagguUAUGCCGa -3'
miRNA:   3'- uCGGCGACguuuUGCUUuu---AUAUGGC- -5'
27922 5' -45.4 NC_005886.2 + 12587 0.69 0.971328
Target:  5'- cGCCGUcuUGaUAGAACGAAAGauucGUACCGu -3'
miRNA:   3'- uCGGCG--AC-GUUUUGCUUUUa---UAUGGC- -5'
27922 5' -45.4 NC_005886.2 + 38712 0.69 0.964107
Target:  5'- cAGCCGCUGUuucAGAucguCGAccAUGUugCGg -3'
miRNA:   3'- -UCGGCGACG---UUUu---GCUuuUAUAugGC- -5'
27922 5' -45.4 NC_005886.2 + 10441 0.69 0.962923
Target:  5'- uGCCGCUGCuuccgcuuguugccGCGuGAcgAUGCCGa -3'
miRNA:   3'- uCGGCGACGuuu-----------UGCuUUuaUAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.