miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27927 5' -53 NC_005886.2 + 26690 0.66 0.844394
Target:  5'- cCGCGCGAgccgcUUGUUgcCGUCCGAUucgagcgugaCGGCGAa -3'
miRNA:   3'- -GCGCGCU-----AGUAA--GUAGGCUG----------GCUGCU- -5'
27927 5' -53 NC_005886.2 + 45927 0.66 0.844394
Target:  5'- gCGCGCGAUCug-CG-CCGAUgCGGCu- -3'
miRNA:   3'- -GCGCGCUAGuaaGUaGGCUG-GCUGcu -5'
27927 5' -53 NC_005886.2 + 13574 0.66 0.844394
Target:  5'- uGCgGUGAUCAgcCGaUCGACCGACa- -3'
miRNA:   3'- gCG-CGCUAGUaaGUaGGCUGGCUGcu -5'
27927 5' -53 NC_005886.2 + 35963 0.66 0.822711
Target:  5'- aGCGcCGAUCGUUCGUCgUGAUCGuuaaaccgugcuuCGAu -3'
miRNA:   3'- gCGC-GCUAGUAAGUAG-GCUGGCu------------GCU- -5'
27927 5' -53 NC_005886.2 + 15072 0.66 0.817101
Target:  5'- cCGCGCGAUgGUgcgccgaauUCAUguaUCGACgCGACGu -3'
miRNA:   3'- -GCGCGCUAgUA---------AGUA---GGCUG-GCUGCu -5'
27927 5' -53 NC_005886.2 + 21814 0.66 0.807591
Target:  5'- gCGUaGCGAUCAgggcgcaCAUCUGAugcCCGAUGAa -3'
miRNA:   3'- -GCG-CGCUAGUaa-----GUAGGCU---GGCUGCU- -5'
27927 5' -53 NC_005886.2 + 28067 0.66 0.807591
Target:  5'- aGCGCGAUCGUggaaagGUCCG-CaCGGCa- -3'
miRNA:   3'- gCGCGCUAGUAag----UAGGCuG-GCUGcu -5'
27927 5' -53 NC_005886.2 + 21987 0.66 0.803734
Target:  5'- uCGCGUGAUCAcgaaucgccaucaUCGUCUGAUgGACa- -3'
miRNA:   3'- -GCGCGCUAGUa------------AGUAGGCUGgCUGcu -5'
27927 5' -53 NC_005886.2 + 24522 0.66 0.797892
Target:  5'- uGCGCGG-CG-UCA-CUGGCCGGCGc -3'
miRNA:   3'- gCGCGCUaGUaAGUaGGCUGGCUGCu -5'
27927 5' -53 NC_005886.2 + 34004 0.66 0.797892
Target:  5'- cCGCGcCGAcCGaaugguUUCcgCCGACCGuCGAa -3'
miRNA:   3'- -GCGC-GCUaGU------AAGuaGGCUGGCuGCU- -5'
27927 5' -53 NC_005886.2 + 38864 0.67 0.777975
Target:  5'- --aGCGAUCAUggcCGUCCGuCgCGACGu -3'
miRNA:   3'- gcgCGCUAGUAa--GUAGGCuG-GCUGCu -5'
27927 5' -53 NC_005886.2 + 9741 0.67 0.776962
Target:  5'- -cCGCGAUCAauUUCAcuaccacUCaacuuGACCGACGAg -3'
miRNA:   3'- gcGCGCUAGU--AAGU-------AGg----CUGGCUGCU- -5'
27927 5' -53 NC_005886.2 + 34712 0.68 0.736375
Target:  5'- cCGUGCGAUCGUUCcgCgcgggugGACgUGACGAu -3'
miRNA:   3'- -GCGCGCUAGUAAGuaGg------CUG-GCUGCU- -5'
27927 5' -53 NC_005886.2 + 22577 0.68 0.714883
Target:  5'- aGCGCGAgcaCAcgccCGUCCGACUGccguGCGAa -3'
miRNA:   3'- gCGCGCUa--GUaa--GUAGGCUGGC----UGCU- -5'
27927 5' -53 NC_005886.2 + 23480 0.69 0.670989
Target:  5'- uCGCGCGGUCGUUgAgaagCUGGaauacgauCCGAUGAa -3'
miRNA:   3'- -GCGCGCUAGUAAgUa---GGCU--------GGCUGCU- -5'
27927 5' -53 NC_005886.2 + 33042 0.69 0.648771
Target:  5'- aCGCGCGA-CGUUC-UCUGAUcuguaCGACGGu -3'
miRNA:   3'- -GCGCGCUaGUAAGuAGGCUG-----GCUGCU- -5'
27927 5' -53 NC_005886.2 + 12636 0.7 0.615351
Target:  5'- gGCGUGAUgAUgggCgGUCCGACCGAUc- -3'
miRNA:   3'- gCGCGCUAgUAa--G-UAGGCUGGCUGcu -5'
27927 5' -53 NC_005886.2 + 15873 0.71 0.560073
Target:  5'- aGCGCGAUCcgUCcgcgCCGAUCGuacCGGa -3'
miRNA:   3'- gCGCGCUAGuaAGua--GGCUGGCu--GCU- -5'
27927 5' -53 NC_005886.2 + 14953 0.71 0.538317
Target:  5'- aGCGCuugcucaaCAUUC-UCUGACCGACGAc -3'
miRNA:   3'- gCGCGcua-----GUAAGuAGGCUGGCUGCU- -5'
27927 5' -53 NC_005886.2 + 38769 0.72 0.495749
Target:  5'- cCGCaCGAUCcgcUCAUCC-ACCGGCGAg -3'
miRNA:   3'- -GCGcGCUAGua-AGUAGGcUGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.