miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27931 5' -51.5 NC_005886.2 + 18270 1.11 0.001781
Target:  5'- cCGACGUAAUCGCGGACAUCAAGCGCGg -3'
miRNA:   3'- -GCUGCAUUAGCGCCUGUAGUUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 6267 0.77 0.312265
Target:  5'- uGGCGUAAUCGUaccggauacgucGGAUAUCAAGaCGCa -3'
miRNA:   3'- gCUGCAUUAGCG------------CCUGUAGUUC-GCGc -5'
27931 5' -51.5 NC_005886.2 + 3909 0.72 0.564939
Target:  5'- -aACGUagcGAUCGCGGuauCGUCGGGCGUu -3'
miRNA:   3'- gcUGCA---UUAGCGCCu--GUAGUUCGCGc -5'
27931 5' -51.5 NC_005886.2 + 15137 0.71 0.598538
Target:  5'- uCGGCGcaccAUCGCGcGGCAUCcccGCGCGa -3'
miRNA:   3'- -GCUGCau--UAGCGC-CUGUAGuu-CGCGC- -5'
27931 5' -51.5 NC_005886.2 + 15903 0.71 0.643709
Target:  5'- uCGaACGUGccGUUGCGGAacacaCGUCGgAGCGCGa -3'
miRNA:   3'- -GC-UGCAU--UAGCGCCU-----GUAGU-UCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 18862 0.71 0.643709
Target:  5'- gCGA-GUGuUCGCGGAaggUAAGCGCGa -3'
miRNA:   3'- -GCUgCAUuAGCGCCUguaGUUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 23631 0.7 0.676383
Target:  5'- uCGACGcGAUUGCguuucggGGGuCAUCGAGCGUGc -3'
miRNA:   3'- -GCUGCaUUAGCG-------CCU-GUAGUUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 30925 0.7 0.699828
Target:  5'- uCGuCGUAcGUUGUGGGCGUCAuggacguuguGGUGCGa -3'
miRNA:   3'- -GCuGCAU-UAGCGCCUGUAGU----------UCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 38395 0.69 0.710892
Target:  5'- aGAUcaAGUCGuCGGacuugaucgGCAUCGAGCGCGu -3'
miRNA:   3'- gCUGcaUUAGC-GCC---------UGUAGUUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 1127 0.69 0.732762
Target:  5'- gGGCGUGAcgCGCGGgguuaaGCcUCAcGCGCGa -3'
miRNA:   3'- gCUGCAUUa-GCGCC------UGuAGUuCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 14927 0.69 0.743543
Target:  5'- -cACGUgcaacGAUCGCGaGACcuUCGAGCGCu -3'
miRNA:   3'- gcUGCA-----UUAGCGC-CUGu-AGUUCGCGc -5'
27931 5' -51.5 NC_005886.2 + 25346 0.68 0.764736
Target:  5'- gGAUGaaauuGUCGCGGAUGUCGccGCGCu -3'
miRNA:   3'- gCUGCau---UAGCGCCUGUAGUu-CGCGc -5'
27931 5' -51.5 NC_005886.2 + 38288 0.68 0.775124
Target:  5'- cCGACGUG--CGCGGGCGUgAugagaacGCGCu -3'
miRNA:   3'- -GCUGCAUuaGCGCCUGUAgUu------CGCGc -5'
27931 5' -51.5 NC_005886.2 + 26818 0.68 0.805303
Target:  5'- gGACcUGAUCGCGGcguuCGUCGAaCGCa -3'
miRNA:   3'- gCUGcAUUAGCGCCu---GUAGUUcGCGc -5'
27931 5' -51.5 NC_005886.2 + 29709 0.68 0.805303
Target:  5'- gGGCGUAccuucgccGUCGCacuucGGGCAUUcgGGGUGCGg -3'
miRNA:   3'- gCUGCAU--------UAGCG-----CCUGUAG--UUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 40290 0.68 0.805303
Target:  5'- -uACGU--UCGCGGucgACAUCGAGCauGCGa -3'
miRNA:   3'- gcUGCAuuAGCGCC---UGUAGUUCG--CGC- -5'
27931 5' -51.5 NC_005886.2 + 24530 0.67 0.833761
Target:  5'- uGACaUGGUgCGCGG-CGUCAcuggccGGCGCGc -3'
miRNA:   3'- gCUGcAUUA-GCGCCuGUAGU------UCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 5601 0.67 0.849012
Target:  5'- gGugGUAAUCGaCGG-UAUCAcgcugguugcgcauAGCGUGu -3'
miRNA:   3'- gCugCAUUAGC-GCCuGUAGU--------------UCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 21234 0.67 0.851633
Target:  5'- uCGugGUGGaccgcuaCGCGcGACAacuaUCAGGUGCGu -3'
miRNA:   3'- -GCugCAUUa------GCGC-CUGU----AGUUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 31065 0.66 0.859363
Target:  5'- uCGGCGgaaugCGCGGACGUUGuuuugucGGCGUu -3'
miRNA:   3'- -GCUGCauua-GCGCCUGUAGU-------UCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.