Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27931 | 5' | -51.5 | NC_005886.2 | + | 31065 | 0.66 | 0.859363 |
Target: 5'- uCGGCGgaaugCGCGGACGUUGuuuugucGGCGUu -3' miRNA: 3'- -GCUGCauua-GCGCCUGUAGU-------UCGCGc -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 32623 | 0.66 | 0.899177 |
Target: 5'- cCGcGCGUGA-CGCGGuGCGUgcAGCGCa -3' miRNA: 3'- -GC-UGCAUUaGCGCC-UGUAguUCGCGc -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 35216 | 0.66 | 0.899177 |
Target: 5'- -cGCGUugaguuUCGCGGGCggCGuGCGCa -3' miRNA: 3'- gcUGCAuu----AGCGCCUGuaGUuCGCGc -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 38288 | 0.68 | 0.775124 |
Target: 5'- cCGACGUG--CGCGGGCGUgAugagaacGCGCu -3' miRNA: 3'- -GCUGCAUuaGCGCCUGUAgUu------CGCGc -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 38395 | 0.69 | 0.710892 |
Target: 5'- aGAUcaAGUCGuCGGacuugaucgGCAUCGAGCGCGu -3' miRNA: 3'- gCUGcaUUAGC-GCC---------UGUAGUUCGCGC- -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 40290 | 0.68 | 0.805303 |
Target: 5'- -uACGU--UCGCGGucgACAUCGAGCauGCGa -3' miRNA: 3'- gcUGCAuuAGCGCC---UGUAGUUCG--CGC- -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 41571 | 0.66 | 0.899177 |
Target: 5'- uCGGCGUcagCGcCGGACGUUGcggccGGUGCGu -3' miRNA: 3'- -GCUGCAuuaGC-GCCUGUAGU-----UCGCGC- -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 41963 | 0.66 | 0.868535 |
Target: 5'- uCGGCGcGGggGCGG-CGUCcGGCGCa -3' miRNA: 3'- -GCUGCaUUagCGCCuGUAGuUCGCGc -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 42131 | 0.66 | 0.891927 |
Target: 5'- -cGCGUGGUCGuuGAUGUC--GCGCGg -3' miRNA: 3'- gcUGCAUUAGCgcCUGUAGuuCGCGC- -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 43480 | 0.66 | 0.899177 |
Target: 5'- gCGACGgAAUcgaCGCGGAUggCAAGC-CGa -3' miRNA: 3'- -GCUGCaUUA---GCGCCUGuaGUUCGcGC- -5' |
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27931 | 5' | -51.5 | NC_005886.2 | + | 46004 | 0.66 | 0.868535 |
Target: 5'- gCGACGUGcguagguucGUCaCGGugcgcaACGUCAAGgGCGg -3' miRNA: 3'- -GCUGCAU---------UAGcGCC------UGUAGUUCgCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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