miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27934 3' -51.9 NC_005886.2 + 21320 1.11 0.001606
Target:  5'- uGCUCGCGAUGACCAAACGUCAGACCGu -3'
miRNA:   3'- -CGAGCGCUACUGGUUUGCAGUCUGGC- -5'
27934 3' -51.9 NC_005886.2 + 17239 0.77 0.296672
Target:  5'- aUUCGCGAUgGACuCGAACGauaUCGGACCGa -3'
miRNA:   3'- cGAGCGCUA-CUG-GUUUGC---AGUCUGGC- -5'
27934 3' -51.9 NC_005886.2 + 44522 0.72 0.530764
Target:  5'- aCUUGCGAUGACCG-GCG-CAGAuaCCGu -3'
miRNA:   3'- cGAGCGCUACUGGUuUGCaGUCU--GGC- -5'
27934 3' -51.9 NC_005886.2 + 9535 0.69 0.687017
Target:  5'- aGCaaGCGGccGGCCGAGCGauUCGGGCCa -3'
miRNA:   3'- -CGagCGCUa-CUGGUUUGC--AGUCUGGc -5'
27934 3' -51.9 NC_005886.2 + 22701 0.69 0.709155
Target:  5'- uUUgGCGAUcGuACCuaguGGCGUCAGACCa -3'
miRNA:   3'- cGAgCGCUA-C-UGGu---UUGCAGUCUGGc -5'
27934 3' -51.9 NC_005886.2 + 12555 0.69 0.730976
Target:  5'- -aUCGCGcgGAUCG---GUCGGACCGc -3'
miRNA:   3'- cgAGCGCuaCUGGUuugCAGUCUGGC- -5'
27934 3' -51.9 NC_005886.2 + 16290 0.67 0.80344
Target:  5'- cGUUCGCa---ACCuacCGUCAGACCGg -3'
miRNA:   3'- -CGAGCGcuacUGGuuuGCAGUCUGGC- -5'
27934 3' -51.9 NC_005886.2 + 41553 0.67 0.831917
Target:  5'- -gUUGCGGccgGugCGuucGGCGUCAGACCc -3'
miRNA:   3'- cgAGCGCUa--CugGU---UUGCAGUCUGGc -5'
27934 3' -51.9 NC_005886.2 + 40947 0.66 0.849819
Target:  5'- cGCUcCGCG-UGACCAcGCGUCGaacACUGc -3'
miRNA:   3'- -CGA-GCGCuACUGGUuUGCAGUc--UGGC- -5'
27934 3' -51.9 NC_005886.2 + 13572 0.66 0.858416
Target:  5'- -gUUGCGGUGAUCAGcCGaUC-GACCGa -3'
miRNA:   3'- cgAGCGCUACUGGUUuGC-AGuCUGGC- -5'
27934 3' -51.9 NC_005886.2 + 24899 0.66 0.874061
Target:  5'- gGCUCGCGcgGGgCGuuuuGCuauccuaGUCGGACUGa -3'
miRNA:   3'- -CGAGCGCuaCUgGUu---UG-------CAGUCUGGC- -5'
27934 3' -51.9 NC_005886.2 + 40912 0.66 0.88269
Target:  5'- gGCgUCGCGAUGGCgCAu-CGUCGugaacucgucGGCCa -3'
miRNA:   3'- -CG-AGCGCUACUG-GUuuGCAGU----------CUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.