Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27934 | 3' | -51.9 | NC_005886.2 | + | 44522 | 0.72 | 0.530764 |
Target: 5'- aCUUGCGAUGACCG-GCG-CAGAuaCCGu -3' miRNA: 3'- cGAGCGCUACUGGUuUGCaGUCU--GGC- -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 22701 | 0.69 | 0.709155 |
Target: 5'- uUUgGCGAUcGuACCuaguGGCGUCAGACCa -3' miRNA: 3'- cGAgCGCUA-C-UGGu---UUGCAGUCUGGc -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 12555 | 0.69 | 0.730976 |
Target: 5'- -aUCGCGcgGAUCG---GUCGGACCGc -3' miRNA: 3'- cgAGCGCuaCUGGUuugCAGUCUGGC- -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 40947 | 0.66 | 0.849819 |
Target: 5'- cGCUcCGCG-UGACCAcGCGUCGaacACUGc -3' miRNA: 3'- -CGA-GCGCuACUGGUuUGCAGUc--UGGC- -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 13572 | 0.66 | 0.858416 |
Target: 5'- -gUUGCGGUGAUCAGcCGaUC-GACCGa -3' miRNA: 3'- cgAGCGCUACUGGUUuGC-AGuCUGGC- -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 24899 | 0.66 | 0.874061 |
Target: 5'- gGCUCGCGcgGGgCGuuuuGCuauccuaGUCGGACUGa -3' miRNA: 3'- -CGAGCGCuaCUgGUu---UG-------CAGUCUGGC- -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 41553 | 0.67 | 0.831917 |
Target: 5'- -gUUGCGGccgGugCGuucGGCGUCAGACCc -3' miRNA: 3'- cgAGCGCUa--CugGU---UUGCAGUCUGGc -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 16290 | 0.67 | 0.80344 |
Target: 5'- cGUUCGCa---ACCuacCGUCAGACCGg -3' miRNA: 3'- -CGAGCGcuacUGGuuuGCAGUCUGGC- -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 9535 | 0.69 | 0.687017 |
Target: 5'- aGCaaGCGGccGGCCGAGCGauUCGGGCCa -3' miRNA: 3'- -CGagCGCUa-CUGGUUUGC--AGUCUGGc -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 17239 | 0.77 | 0.296672 |
Target: 5'- aUUCGCGAUgGACuCGAACGauaUCGGACCGa -3' miRNA: 3'- cGAGCGCUA-CUG-GUUUGC---AGUCUGGC- -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 21320 | 1.11 | 0.001606 |
Target: 5'- uGCUCGCGAUGACCAAACGUCAGACCGu -3' miRNA: 3'- -CGAGCGCUACUGGUUUGCAGUCUGGC- -5' |
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27934 | 3' | -51.9 | NC_005886.2 | + | 40912 | 0.66 | 0.88269 |
Target: 5'- gGCgUCGCGAUGGCgCAu-CGUCGugaacucgucGGCCa -3' miRNA: 3'- -CG-AGCGCUACUG-GUuuGCAGU----------CUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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